(7 nodes) Axon choice point recognition, and Sensory neuron axon guidance network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	madd-2	Protein CBR-TRIM-9. (768 aa)
	slt-1	Protein CBR-SLT-1. (1376 aa)
	unc-6	Protein CBR-UNC-6. (621 aa)
	sax-3	Protein CBR-SAX-3. (1295 aa)
	unc-40	Protein CBR-UNC-40. (1407 aa)
	eva-1	Protein CBR-TAG-271. (467 aa)
	unc-5	Protein CBR-UNC-5. (922 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
eva-1	madd-2	A8XWI9	A8WPI5	Protein CBR-TAG-271.	Protein CBR-TRIM-9.	0.639
eva-1	sax-3	A8XWI9	A8XJJ4	Protein CBR-TAG-271.	Protein CBR-SAX-3.	0.821
eva-1	slt-1	A8XWI9	A8X4J3	Protein CBR-TAG-271.	Protein CBR-SLT-1.	0.895
eva-1	unc-40	A8XWI9	A8XKZ7	Protein CBR-TAG-271.	Protein CBR-UNC-40.	0.688
eva-1	unc-5	A8XWI9	A8XWR5	Protein CBR-TAG-271.	Protein CBR-UNC-5.	0.786
eva-1	unc-6	A8XWI9	A8XCA2	Protein CBR-TAG-271.	Protein CBR-UNC-6.	0.481
madd-2	eva-1	A8WPI5	A8XWI9	Protein CBR-TRIM-9.	Protein CBR-TAG-271.	0.639
madd-2	sax-3	A8WPI5	A8XJJ4	Protein CBR-TRIM-9.	Protein CBR-SAX-3.	0.697
madd-2	slt-1	A8WPI5	A8X4J3	Protein CBR-TRIM-9.	Protein CBR-SLT-1.	0.758
madd-2	unc-40	A8WPI5	A8XKZ7	Protein CBR-TRIM-9.	Protein CBR-UNC-40.	0.926
madd-2	unc-5	A8WPI5	A8XWR5	Protein CBR-TRIM-9.	Protein CBR-UNC-5.	0.649
madd-2	unc-6	A8WPI5	A8XCA2	Protein CBR-TRIM-9.	Protein CBR-UNC-6.	0.830
sax-3	eva-1	A8XJJ4	A8XWI9	Protein CBR-SAX-3.	Protein CBR-TAG-271.	0.821
sax-3	madd-2	A8XJJ4	A8WPI5	Protein CBR-SAX-3.	Protein CBR-TRIM-9.	0.697
sax-3	slt-1	A8XJJ4	A8X4J3	Protein CBR-SAX-3.	Protein CBR-SLT-1.	0.999
sax-3	unc-40	A8XJJ4	A8XKZ7	Protein CBR-SAX-3.	Protein CBR-UNC-40.	0.903
sax-3	unc-6	A8XJJ4	A8XCA2	Protein CBR-SAX-3.	Protein CBR-UNC-6.	0.921
slt-1	eva-1	A8X4J3	A8XWI9	Protein CBR-SLT-1.	Protein CBR-TAG-271.	0.895
slt-1	madd-2	A8X4J3	A8WPI5	Protein CBR-SLT-1.	Protein CBR-TRIM-9.	0.758
slt-1	sax-3	A8X4J3	A8XJJ4	Protein CBR-SLT-1.	Protein CBR-SAX-3.	0.999