(15 nodes) Cell-extracellular matrix interactions, and Filamin family network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	unc-112	Protein CBR-UNC-112. (720 aa)
	CBG09042	Protein CBG09042. (124 aa)
	pxl-1	Protein CBR-PXL-1. (256 aa)
	rsu-1	Protein CBR-RSU-1. (268 aa)
	fln-1	Protein CBG10542. (1091 aa)
	CBG10541	Protein CBG10541. (1363 aa)
	CBG13537	Protein CBG13537. (82 aa)
	unc-97	LIM domain-containing protein. (353 aa)
	Cbr-pat-4	Protein CBR-PAT-4. (278 aa)
	Cbr-fln-2.1	Protein CBR-FLN-2.1. (1967 aa)
	pin-2	Protein CBR-PIN-2. (328 aa)
	pat-6	Protein CBR-PAT-6. (379 aa)
	atn-1	Protein CBR-ATN-1. (894 aa)
	CBG25184	Protein CBG25184. (1573 aa)
	deb-1	Protein CBR-DEB-1, isoform a. (1074 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG09042	CBG10541	A8X7Y3	A8XBE3	Protein CBG09042.	Protein CBG10541.	0.603
CBG09042	CBG13537	A8X7Y3	A8XI47	Protein CBG09042.	Protein CBG13537.	0.501
CBG09042	CBG25184	A8X7Y3	B6IM09	Protein CBG09042.	Protein CBG25184.	0.939
CBG09042	Cbr-fln-2.1	A8X7Y3	A8XP10	Protein CBG09042.	Protein CBR-FLN-2.1.	0.665
CBG09042	Cbr-pat-4	A8X7Y3	A8XMT5	Protein CBG09042.	Protein CBR-PAT-4.	0.824
CBG09042	atn-1	A8X7Y3	A8Y3R8	Protein CBG09042.	Protein CBR-ATN-1.	0.835
CBG09042	deb-1	A8X7Y3	H8WGV0	Protein CBG09042.	Protein CBR-DEB-1, isoform a.	0.978
CBG09042	fln-1	A8X7Y3	A8XBE2	Protein CBG09042.	Protein CBG10542.	0.603
CBG09042	pat-6	A8X7Y3	A8Y2J2	Protein CBG09042.	Protein CBR-PAT-6.	0.984
CBG09042	unc-112	A8X7Y3	A8WXX4	Protein CBG09042.	Protein CBR-UNC-112.	0.758
CBG10541	CBG09042	A8XBE3	A8X7Y3	Protein CBG10541.	Protein CBG09042.	0.603
CBG10541	CBG25184	A8XBE3	B6IM09	Protein CBG10541.	Protein CBG25184.	0.840
CBG10541	Cbr-fln-2.1	A8XBE3	A8XP10	Protein CBG10541.	Protein CBR-FLN-2.1.	0.903
CBG10541	Cbr-pat-4	A8XBE3	A8XMT5	Protein CBG10541.	Protein CBR-PAT-4.	0.570
CBG10541	deb-1	A8XBE3	H8WGV0	Protein CBG10541.	Protein CBR-DEB-1, isoform a.	0.804
CBG10541	fln-1	A8XBE3	A8XBE2	Protein CBG10541.	Protein CBG10542.	0.914
CBG10541	pxl-1	A8XBE3	A8X7Y4	Protein CBG10541.	Protein CBR-PXL-1.	0.702
CBG10541	unc-112	A8XBE3	A8WXX4	Protein CBG10541.	Protein CBR-UNC-112.	0.413
CBG13537	CBG09042	A8XI47	A8X7Y3	Protein CBG13537.	Protein CBG09042.	0.501
CBG13537	atn-1	A8XI47	A8Y3R8	Protein CBG13537.	Protein CBR-ATN-1.	0.525