STRINGSTRING
lam-3 lam-3 CBG01202 CBG01202 col-99 col-99 col-80 col-80 CBG02494 CBG02494 pat-3 pat-3 epi-1 epi-1 ina-1 ina-1 pat-2 pat-2 mup-4 mup-4 nid-1 nid-1 mua-3 mua-3 let-805 let-805 emb-9 emb-9 lam-2 lam-2 unc-52 unc-52 ddr-1 ddr-1 Cbr-vab-10 Cbr-vab-10 CBG15811 CBG15811 let-2 let-2 ten-1 ten-1 dgn-1 dgn-1 lam-1 lam-1 fbl-1 fbl-1 CBG20114 CBG20114 CBG20438 CBG20438 mig-6 mig-6 mig-18 mig-18 mig-17 mig-17 cle-1 cle-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lam-3Protein CBR-LAM-3. (3141 aa)
CBG01202Protein CBG01202. (337 aa)
col-99Putative cuticle collagen 99; Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment (By similarity). (686 aa)
col-80Protein CBR-COL-80. (318 aa)
CBG02494Protein CBG02494. (72 aa)
pat-3Integrin beta; Belongs to the integrin beta chain family. (818 aa)
epi-1Protein CBR-EPI-1. (3820 aa)
ina-1Protein CBR-INA-1; Belongs to the integrin alpha chain family. (1147 aa)
pat-2Integrin alpha pat-2; Required for muscle development probably through the regulation of the actin-myosin cytoskeleton. During the formation of neuromuscular junctions at the larval stage, negatively regulates membrane protrusion from body wall muscles, probably through lamins such as epi-1, lam-2 and unc-52. Required for distal tip cell migration and dorsal pathfinding. Required for egg-laying. May play a role in cell motility and cell-cell interactions. (1224 aa)
mup-4Protein CBR-MUP-4. (2101 aa)
nid-1Protein CBR-NID-1. (1590 aa)
mua-3Protein CBR-MUA-3. (3770 aa)
let-805Protein CBR-LET-805. (4544 aa)
emb-9Protein CBR-EMB-9. (1759 aa)
lam-2Protein CBR-LAM-2. (1646 aa)
unc-52Protein CBR-UNC-52. (2481 aa)
ddr-1Protein CBR-DDR-1. (821 aa)
Cbr-vab-10Protein CBR-VAB-10. (1308 aa)
CBG15811Protein CBG15811. (3870 aa)
let-2Protein CBR-LET-2. (1739 aa)
ten-1Protein CBR-TEN-1. (2909 aa)
dgn-1Protein CBR-DGN-1. (594 aa)
lam-1Protein CBR-LAM-1. (1183 aa)
fbl-1Protein CBR-FBL-1. (925 aa)
CBG20114Protein CBG20114. (554 aa)
CBG20438Protein CBG20438. (110 aa)
mig-6Protein CBR-MIG-6. (2157 aa)
mig-18Protein CBG21220. (228 aa)
mig-17Protein CBR-MIG-17. (533 aa)
cle-1Protein CBR-CLE-1, isoform b. (1292 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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