STRINGSTRING
smk-1 smk-1 CBG03194 CBG03194 sur-6 sur-6 paa-1 paa-1 let-92 let-92 CBG09818 CBG09818 ppfr-4 ppfr-4 pph-4.1 pph-4.1 rsa-1 rsa-1 ppfr-2 ppfr-2 CBG16342 CBG16342 CBG16341 CBG16341 ppfr-1 ppfr-1 pptr-1 pptr-1 pptr-2 pptr-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
smk-1Protein CBR-SMK-1. (1124 aa)
CBG03194Protein CBG03194. (960 aa)
sur-6Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (496 aa)
paa-1Protein CBR-PAA-1. (606 aa)
let-92Serine/threonine-protein phosphatase. (318 aa)
CBG09818Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (385 aa)
ppfr-4Protein CBR-PPFR-4. (327 aa)
pph-4.1Serine/threonine-protein phosphatase 4 catalytic subunit 1; Protein phosphatase which plays an essential role in meiosis and in early embryonic mitosis. During spermatocyte meiosis and the first embryonic mitosis, regulates centrosome maturation, and thus spindle formation, by recruiting some of the components of the pericentriolar material (PCM). During oocyte meiosis I, regulates meiotic chromosome dynamics including synapsis-independent chromosome pairing, restriction of synapsis to homologous chromosomes, programmed DNA double-strand break initiation and crossover formation resulti [...] (333 aa)
rsa-1Protein CBR-RSA-1. (236 aa)
ppfr-2Protein CBR-PPFR-2. (447 aa)
CBG16342Protein CBG16342. (604 aa)
CBG16341Protein CBG16341. (787 aa)
ppfr-1Protein CBR-PPFR-1. (1472 aa)
pptr-1Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (531 aa)
pptr-2Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (556 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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