(13 nodes) Dwarfin, and Activin binding network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	daf-7	Protein CBR-DAF-7. (376 aa)
	daf-1	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (665 aa)
	Cbr-tag-68	Dwarfin sma. (415 aa)
	daf-14	Protein CBR-DAF-14. (486 aa)
	sma-2	Dwarfin sma. (399 aa)
	daf-3	Dwarfin sma. (1043 aa)
	tig-2	Protein CBR-TIG-2. (364 aa)
	sma-4	Dwarfin sma. (603 aa)
	daf-4	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (742 aa)
	daf-8	Dwarfin sma. (585 aa)
	aka-1	Protein CBR-AKA-1. (1337 aa)
	sma-3	Dwarfin sma. (365 aa)
	daf-5	Protein CBR-DAF-5. (720 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cbr-tag-68	aka-1	A8WS81	A8XGZ1	Dwarfin sma.	Protein CBR-AKA-1.	0.576
Cbr-tag-68	daf-1	A8WS81	A8WR60	Dwarfin sma.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.597
Cbr-tag-68	daf-14	A8WS81	A8WXH4	Dwarfin sma.	Protein CBR-DAF-14.	0.859
Cbr-tag-68	daf-3	A8WS81	A8X5U1	Dwarfin sma.	Dwarfin sma.	0.760
Cbr-tag-68	daf-4	A8WS81	A8X847	Dwarfin sma.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.530
Cbr-tag-68	daf-5	A8WS81	A8XYQ9	Dwarfin sma.	Protein CBR-DAF-5.	0.419
Cbr-tag-68	daf-7	A8WS81	A8WLR3	Dwarfin sma.	Protein CBR-DAF-7.	0.408
Cbr-tag-68	daf-8	A8WS81	A8XFY2	Dwarfin sma.	Dwarfin sma.	0.836
Cbr-tag-68	sma-2	A8WS81	A8X3D3	Dwarfin sma.	Dwarfin sma.	0.647
Cbr-tag-68	sma-3	A8WS81	A8XPG1	Dwarfin sma.	Dwarfin sma.	0.647
Cbr-tag-68	sma-4	A8WS81	A8X7T9	Dwarfin sma.	Dwarfin sma.	0.567
Cbr-tag-68	tig-2	A8WS81	A8X7F5	Dwarfin sma.	Protein CBR-TIG-2.	0.746
aka-1	Cbr-tag-68	A8XGZ1	A8WS81	Protein CBR-AKA-1.	Dwarfin sma.	0.576
aka-1	daf-1	A8XGZ1	A8WR60	Protein CBR-AKA-1.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.592
aka-1	daf-14	A8XGZ1	A8WXH4	Protein CBR-AKA-1.	Protein CBR-DAF-14.	0.576
aka-1	daf-3	A8XGZ1	A8X5U1	Protein CBR-AKA-1.	Dwarfin sma.	0.728
aka-1	daf-4	A8XGZ1	A8X847	Protein CBR-AKA-1.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.672
aka-1	daf-5	A8XGZ1	A8XYQ9	Protein CBR-AKA-1.	Protein CBR-DAF-5.	0.452
aka-1	daf-7	A8XGZ1	A8WLR3	Protein CBR-AKA-1.	Protein CBR-DAF-7.	0.408
aka-1	daf-8	A8XGZ1	A8XFY2	Protein CBR-AKA-1.	Dwarfin sma.	0.938