(14 nodes) Mixed, incl. DDE transposase sub-family, and Transcription regulator LuxR, C-terminal network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG24221	Protein CBG24221. (509 aa)
	CBG05734	Protein CBG05734. (310 aa)
	CBG08001	Protein CBG08001. (123 aa)
	CBG08665	Protein CBG08665. (302 aa)
	CBG08763	Protein CBG08763. (823 aa)
	CBG15863	Protein CBG15863. (564 aa)
	CBG17465	Protein CBG17465. (323 aa)
	CBG27374	Protein CBG27374. (172 aa)
	CBG26805	Protein CBG26805. (344 aa)
	CBG25534	Protein CBG25534. (344 aa)
	CBG26279	Protein CBG26279. (303 aa)
	CBG27598	Protein CBG27598. (344 aa)
	CBG27381	Protein CBG27381. (238 aa)
	CBG27040	Protein CBG27040. (268 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG05734	CBG27040	A8X1R9	G2J752	Protein CBG05734.	Protein CBG27040.	0.425
CBG08001	CBG08665	A8X5J8	A8X6V3	Protein CBG08001.	Protein CBG08665.	0.401
CBG08001	CBG08763	A8X5J8	A8X7C2	Protein CBG08001.	Protein CBG08763.	0.448
CBG08001	CBG15863	A8X5J8	A8XMV3	Protein CBG08001.	Protein CBG15863.	0.464
CBG08665	CBG08001	A8X6V3	A8X5J8	Protein CBG08665.	Protein CBG08001.	0.401
CBG08763	CBG08001	A8X7C2	A8X5J8	Protein CBG08763.	Protein CBG08001.	0.448
CBG08763	CBG24221	A8X7C2	A8WK89	Protein CBG08763.	Protein CBG24221.	0.443
CBG15863	CBG08001	A8XMV3	A8X5J8	Protein CBG15863.	Protein CBG08001.	0.464
CBG15863	CBG24221	A8XMV3	A8WK89	Protein CBG15863.	Protein CBG24221.	0.463
CBG24221	CBG08763	A8WK89	A8X7C2	Protein CBG24221.	Protein CBG08763.	0.443
CBG24221	CBG15863	A8WK89	A8XMV3	Protein CBG24221.	Protein CBG15863.	0.463
CBG25534	CBG27374	B6IIQ6	B6IGH4	Protein CBG25534.	Protein CBG27374.	0.454
CBG26805	CBG27374	B6IIC1	B6IGH4	Protein CBG26805.	Protein CBG27374.	0.432
CBG27040	CBG05734	G2J752	A8X1R9	Protein CBG27040.	Protein CBG05734.	0.425
CBG27374	CBG25534	B6IGH4	B6IIQ6	Protein CBG27374.	Protein CBG25534.	0.454
CBG27374	CBG26805	B6IGH4	B6IIC1	Protein CBG27374.	Protein CBG26805.	0.432
CBG27374	CBG27598	B6IGH4	B6IKG8	Protein CBG27374.	Protein CBG27598.	0.460
CBG27598	CBG27374	B6IKG8	B6IGH4	Protein CBG27598.	Protein CBG27374.	0.460