(58 nodes) Mixed, incl. Collagen triple helix repeat, and Pharynx development network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pqn-71	Protein CBR-PQN-71. (344 aa)
	col-182	Protein CBR-COL-182. (281 aa)
	CBG00402	Protein CBG00402. (487 aa)
	col-77	Protein CBR-COL-77. (317 aa)
	abu-14	Protein CBR-ABU-14. (383 aa)
	clec-218	Protein CBR-CLEC-218. (381 aa)
	CBG01472	Protein CBG01472. (295 aa)
	pqn-74	Protein CBR-PQN-74. (397 aa)
	CBG03177	Protein CBG03177. (841 aa)
	CBG03085	Protein CBG03085. (169 aa)
	CBG02722	Protein CBG02722. (311 aa)
	nmgp-1	Protein CBR-NMGP-1. (273 aa)
	CBG02606	Protein CBG02606. (508 aa)
	CBG02561	Protein CBG02561. (953 aa)
	CBG02445	Protein CBG02445. (239 aa)
	col-130	Protein CBR-COL-130. (252 aa)
	ebax-1	Protein CBR-PQN-55. (1703 aa)
	nas-30	Metalloendopeptidase. (842 aa)
	col-131	Protein CBR-COL-131. (309 aa)
	CBG06160	Protein CBG06160. (402 aa)
	col-113	Protein CBR-COL-113. (346 aa)
	CBG06343	Protein CBG06343. (342 aa)
	cut-2	Protein CBR-CUT-2. (209 aa)
	abu-11	Protein CBR-ABU-11. (381 aa)
	CBG07758	Protein CBG07758. (224 aa)
	Cbr-abu-8	Protein CBR-ABU-8. (443 aa)
	Cbr-abu-7	Protein CBR-ABU-7. (432 aa)
	CBG08779	Protein CBG08779. (146 aa)
	CBG08832	Protein CBG08832. (176 aa)
	CBG08865	Protein CBG08865. (67 aa)
	CBG08866	Protein CBG08866. (71 aa)
	col-172	Protein CBR-COL-172. (341 aa)
	myo-5	Protein CBR-MYO-5; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1979 aa)
	col-58	Protein CBR-COL-58. (289 aa)
	CBG12685	Protein CBG12685. (107 aa)
	nas-7	Metalloendopeptidase. (389 aa)
	CBG13285	Protein CBG13285. (272 aa)
	abu-10	Protein CBR-ABU-10. (383 aa)
	col-104	Protein CBR-COL-104. (281 aa)
	col-65	Protein CBR-COL-65. (302 aa)
	col-97	Protein CBR-COL-97. (298 aa)
	CBG15872	Protein CBG15872. (105 aa)
	dpy-31	Zinc metalloproteinase. (593 aa)
	CBG16832	Protein CBG16832. (314 aa)
	col-115	Protein CBR-COL-115. (408 aa)
	col-14	Protein CBR-COL-14. (326 aa)
	col-89	Protein CBR-COL-89. (296 aa)
	pqn-29	Protein CBR-PQN-29. (548 aa)
	lron-2	Protein CBR-LRON-2. (826 aa)
	pqn-63	Protein CBR-PQN-63. (440 aa)
	CBG19320	Protein CBG19320. (185 aa)
	CBG19323	Protein CBG19323. (242 aa)
	CBG19960	Protein CBG19960. (275 aa)
	CBG20612	Protein CBG20612. (202 aa)
	CBG20883	Protein CBG20883. (439 aa)
	CBG21276	Protein CBG21276. (171 aa)
	CBG23478	Protein CBG23478. (105 aa)
	sqt-3	Protein CBR-SQT-3. (301 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG01472	CBG02445	A8WQL8	A8WUB2	Protein CBG01472.	Protein CBG02445.	0.481
CBG01472	CBG13285	A8WQL8	A8XHH1	Protein CBG01472.	Protein CBG13285.	0.418
CBG01472	CBG19320	A8WQL8	A8XVC5	Protein CBG01472.	Protein CBG19320.	0.424
CBG01472	CBG19323	A8WQL8	A8XVC8	Protein CBG01472.	Protein CBG19323.	0.438
CBG01472	CBG20883	A8WQL8	A8XYV5	Protein CBG01472.	Protein CBG20883.	0.509
CBG01472	CBG21276	A8WQL8	A8XZR2	Protein CBG01472.	Protein CBG21276.	0.493
CBG01472	abu-10	A8WQL8	A8XJP3	Protein CBG01472.	Protein CBR-ABU-10.	0.426
CBG01472	abu-11	A8WQL8	A8X411	Protein CBG01472.	Protein CBR-ABU-11.	0.517
CBG01472	pqn-63	A8WQL8	A8XVC4	Protein CBG01472.	Protein CBR-PQN-63.	0.510
CBG01472	pqn-74	A8WQL8	A8WQU0	Protein CBG01472.	Protein CBR-PQN-74.	0.462
CBG02445	CBG01472	A8WUB2	A8WQL8	Protein CBG02445.	Protein CBG01472.	0.481
CBG02445	CBG06160	A8WUB2	A8X0S4	Protein CBG02445.	Protein CBG06160.	0.868
CBG02445	CBG07758	A8WUB2	A8X452	Protein CBG02445.	Protein CBG07758.	0.414
CBG02445	CBG08832	A8WUB2	A8X7H8	Protein CBG02445.	Protein CBG08832.	0.410
CBG02445	CBG13285	A8WUB2	A8XHH1	Protein CBG02445.	Protein CBG13285.	0.475
CBG02445	CBG19323	A8WUB2	A8XVC8	Protein CBG02445.	Protein CBG19323.	0.418
CBG02445	CBG19960	A8WUB2	A8XWT7	Protein CBG02445.	Protein CBG19960.	0.838
CBG02445	CBG20883	A8WUB2	A8XYV5	Protein CBG02445.	Protein CBG20883.	0.514
CBG02445	CBG21276	A8WUB2	A8XZR2	Protein CBG02445.	Protein CBG21276.	0.916
CBG02445	abu-11	A8WUB2	A8X411	Protein CBG02445.	Protein CBR-ABU-11.	0.508