(21 nodes) Mostly uncharacterized, incl. Ion homeostasis, and Zinc finger, SWIM-type network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	clec-218	Protein CBR-CLEC-218. (381 aa)
	CBG01472	Protein CBG01472. (295 aa)
	pqn-74	Protein CBR-PQN-74. (397 aa)
	CBG03177	Protein CBG03177. (841 aa)
	CBG03085	Protein CBG03085. (169 aa)
	CBG02722	Protein CBG02722. (311 aa)
	ebax-1	Protein CBR-PQN-55. (1703 aa)
	nas-30	Metalloendopeptidase. (842 aa)
	abu-11	Protein CBR-ABU-11. (381 aa)
	CBG07758	Protein CBG07758. (224 aa)
	Cbr-abu-8	Protein CBR-ABU-8. (443 aa)
	Cbr-abu-7	Protein CBR-ABU-7. (432 aa)
	CBG13285	Protein CBG13285. (272 aa)
	abu-10	Protein CBR-ABU-10. (383 aa)
	CBG16832	Protein CBG16832. (314 aa)
	pqn-29	Protein CBR-PQN-29. (548 aa)
	lron-2	Protein CBR-LRON-2. (826 aa)
	pqn-63	Protein CBR-PQN-63. (440 aa)
	CBG19320	Protein CBG19320. (185 aa)
	CBG19323	Protein CBG19323. (242 aa)
	CBG20883	Protein CBG20883. (439 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG01472	CBG13285	A8WQL8	A8XHH1	Protein CBG01472.	Protein CBG13285.	0.418
CBG01472	CBG19320	A8WQL8	A8XVC5	Protein CBG01472.	Protein CBG19320.	0.424
CBG01472	CBG19323	A8WQL8	A8XVC8	Protein CBG01472.	Protein CBG19323.	0.438
CBG01472	CBG20883	A8WQL8	A8XYV5	Protein CBG01472.	Protein CBG20883.	0.509
CBG01472	abu-10	A8WQL8	A8XJP3	Protein CBG01472.	Protein CBR-ABU-10.	0.426
CBG01472	abu-11	A8WQL8	A8X411	Protein CBG01472.	Protein CBR-ABU-11.	0.517
CBG01472	pqn-63	A8WQL8	A8XVC4	Protein CBG01472.	Protein CBR-PQN-63.	0.510
CBG01472	pqn-74	A8WQL8	A8WQU0	Protein CBG01472.	Protein CBR-PQN-74.	0.462
CBG03085	lron-2	A8WSU1	A8XV63	Protein CBG03085.	Protein CBR-LRON-2.	0.418
CBG03177	abu-11	A8WSM0	A8X411	Protein CBG03177.	Protein CBR-ABU-11.	0.495
CBG03177	pqn-63	A8WSM0	A8XVC4	Protein CBG03177.	Protein CBR-PQN-63.	0.479
CBG07758	CBG13285	A8X452	A8XHH1	Protein CBG07758.	Protein CBG13285.	0.403
CBG07758	pqn-74	A8X452	A8WQU0	Protein CBG07758.	Protein CBR-PQN-74.	0.443
CBG13285	CBG01472	A8XHH1	A8WQL8	Protein CBG13285.	Protein CBG01472.	0.418
CBG13285	CBG07758	A8XHH1	A8X452	Protein CBG13285.	Protein CBG07758.	0.403
CBG16832	abu-10	A8XPW9	A8XJP3	Protein CBG16832.	Protein CBR-ABU-10.	0.407
CBG19320	CBG01472	A8XVC5	A8WQL8	Protein CBG19320.	Protein CBG01472.	0.424
CBG19320	CBG19323	A8XVC5	A8XVC8	Protein CBG19320.	Protein CBG19323.	0.438
CBG19320	CBG20883	A8XVC5	A8XYV5	Protein CBG19320.	Protein CBG20883.	0.418
CBG19320	abu-10	A8XVC5	A8XJP3	Protein CBG19320.	Protein CBR-ABU-10.	0.444