STRINGSTRING
him-14 him-14 msh-5 msh-5 rad-51 rad-51 spo-11 spo-11 cosa-1 cosa-1 rad-54 rad-54 zhp-3 zhp-3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
him-14Protein CBR-HIM-14. (771 aa)
msh-5Protein CBR-MSH-5. (1332 aa)
rad-51DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. (357 aa)
spo-11Protein CBR-SPO-11. (426 aa)
cosa-1Protein CBG09841. (286 aa)
rad-54Protein CBR-RAD-54. (1079 aa)
zhp-3Protein CBR-ZHP-3. (394 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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