(25 nodes) Mostly uncharacterized, incl. Frag1/DRAM/Sfk1 family, and Lipase (class 2) network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG23843	Protein CBG23843. (162 aa)
	CBG01704	Protein CBG01704. (280 aa)
	CBG03165	Protein CBG03165. (619 aa)
	CBG03164	Protein CBG03164. (570 aa)
	CBG02985	Protein CBG02985. (214 aa)
	ptr-18	Protein CBR-PTR-18. (905 aa)
	lips-9	Protein CBR-LIPS-9. (302 aa)
	CBG02730	Protein CBG02730. (99 aa)
	CBG04322	Protein CBG04322. (223 aa)
	CBG06090	Protein CBG06090. (274 aa)
	lips-7	Protein CBR-LIPS-7. (289 aa)
	CBG06983	Protein CBG06983. (576 aa)
	CBG08345	Protein CBG08345. (208 aa)
	CBG09484	Protein CBG09484. (168 aa)
	CBG09258	Protein CBG09258. (602 aa)
	CBG11062	Protein CBG11062. (323 aa)
	osr-1	Protein CBR-OSR-1. (630 aa)
	CBG15066	Protein CBG15066. (297 aa)
	CBG15073	Protein CBG15073. (161 aa)
	CBG15264	Protein CBG15264. (219 aa)
	CBG16726	Protein CBG16726. (257 aa)
	CBG18553	Protein CBG18553. (769 aa)
	CBG19137	Protein CBG19137. (713 aa)
	CBG20827	Protein CBG20827. (362 aa)
	CBG21919	Protein CBG21919. (243 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG01704	CBG15073	A8WR16	A8XLB9	Protein CBG01704.	Protein CBG15073.	0.431
CBG02730	CBG09484	A8WTM6	A8X903	Protein CBG02730.	Protein CBG09484.	0.418
CBG02985	CBG15066	A8WT20	A8XLB5	Protein CBG02985.	Protein CBG15066.	0.418
CBG02985	CBG15264	A8WT20	A8XLJ0	Protein CBG02985.	Protein CBG15264.	0.418
CBG02985	CBG19137	A8WT20	A8XUW8	Protein CBG02985.	Protein CBG19137.	0.418
CBG02985	lips-7	A8WT20	A8X3R1	Protein CBG02985.	Protein CBR-LIPS-7.	0.420
CBG06090	ptr-18	A8X0X6	A8WTK0	Protein CBG06090.	Protein CBR-PTR-18.	0.777
CBG06983	CBG11062	A8X3Z8	A8XCB4	Protein CBG06983.	Protein CBG11062.	0.443
CBG06983	CBG18553	A8X3Z8	A8XTK2	Protein CBG06983.	Protein CBG18553.	0.430
CBG06983	osr-1	A8X3Z8	A8XFQ5	Protein CBG06983.	Protein CBR-OSR-1.	0.671
CBG08345	CBG15073	A8X6C7	A8XLB9	Protein CBG08345.	Protein CBG15073.	0.418
CBG08345	CBG18553	A8X6C7	A8XTK2	Protein CBG08345.	Protein CBG18553.	0.411
CBG08345	CBG20827	A8X6C7	A8XYQ4	Protein CBG08345.	Protein CBG20827.	0.418
CBG08345	CBG21919	A8X6C7	A8Y182	Protein CBG08345.	Protein CBG21919.	0.443
CBG09258	CBG15073	A8X9I4	A8XLB9	Protein CBG09258.	Protein CBG15073.	0.418
CBG09484	CBG02730	A8X903	A8WTM6	Protein CBG09484.	Protein CBG02730.	0.418
CBG11062	CBG06983	A8XCB4	A8X3Z8	Protein CBG11062.	Protein CBG06983.	0.443
CBG11062	CBG18553	A8XCB4	A8XTK2	Protein CBG11062.	Protein CBG18553.	0.442
CBG11062	lips-9	A8XCB4	A8WTK6	Protein CBG11062.	Protein CBR-LIPS-9.	0.418
CBG15066	CBG02985	A8XLB5	A8WT20	Protein CBG15066.	Protein CBG02985.	0.418