(50 nodes) Mixed, incl. PcG protein complex, and Heterochromatin network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG00165	Protein CBG00165. (652 aa)
	set-15	Protein CBR-SET-15. (621 aa)
	CBG01999	Protein CBG01999. (1048 aa)
	CBG02011	Protein CBG02011. (556 aa)
	CBG02012	Protein CBG02012. (518 aa)
	CBG02150	Protein CBG02150. (727 aa)
	cec-3	Protein CBR-CEC-3. (339 aa)
	set-25	Protein CBG03572. (705 aa)
	hpl-1	Protein CBG05267. (216 aa)
	CBG05455	Protein CBG05455. (705 aa)
	cec-5	Protein CBR-CEC-5. (398 aa)
	cec-4	Protein CBR-CEC-4. (311 aa)
	mes-4	Protein CBR-MES-4. (836 aa)
	CBG07528	Protein CBG07528. (837 aa)
	CBG07525	Protein CBG07525. (133 aa)
	CBG07523	Protein CBG07523. (612 aa)
	CBG07435	Protein CBG07435. (485 aa)
	CBG08298	Protein CBG08298. (433 aa)
	CBG09790	Protein CBG09790. (516 aa)
	CBG10339	Protein CBG10339. (435 aa)
	Cbr-set-25	Protein CBR-SET-25. (542 aa)
	CBG10226	Protein CBG10226. (806 aa)
	CBG10647	Protein CBG10647. (489 aa)
	CBG10648	Protein CBG10648. (487 aa)
	CBG10697	Protein CBG10697. (729 aa)
	mes-3	Protein CBR-MES-3. (753 aa)
	mes-2	Protein CBR-MES-2. (930 aa)
	Cbr-lin-61	Protein CBR-LIN-61. (486 aa)
	CBG13888	Protein CBG13888. (122 aa)
	CBG14449	Protein CBG14449. (597 aa)
	spat-3	Protein CBR-SPAT-3. (2691 aa)
	CBG14723	Protein CBG14723. (531 aa)
	Cbr-tag-294	Protein CBR-TAG-294. (423 aa)
	mes-6.1	Protein CBR-MES-6. (484 aa)
	mes-6.2	Protein CBG15631. (592 aa)
	CBG16272	Protein CBG16272. (476 aa)
	CBG17405	Protein CBG17405. (176 aa)
	CBG17408	Protein CBG17408. (1480 aa)
	hpl-2	Protein CBR-HPL-2. (305 aa)
	cec-1	Protein CBR-CEC-1. (321 aa)
	CBG19573	Protein CBG19573. (422 aa)
	tep-1	Protein CBR-TEP-1. (1526 aa)
	cec-6	Protein CBG19921. (1702 aa)
	jmjd-2	Protein CBR-JMJD-2. (881 aa)
	lin-61	Protein CBG21916. (614 aa)
	CBG23439	Protein CBG23439. (173 aa)
	CBG26142	Protein CBG26142. (139 aa)
	CBG27695	Protein CBG27695. (506 aa)
	CBG24719	Protein CBG24719. (180 aa)
	jhdm-1	JmjC domain-containing histone demethylation protein 1; Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code. (1063 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00165	CBG02011	A8WME2	A8WRT0	Protein CBG00165.	Protein CBG02011.	0.540
CBG00165	CBG02012	A8WME2	A8WRT1	Protein CBG00165.	Protein CBG02012.	0.811
CBG00165	CBG02150	A8WME2	A8WS26	Protein CBG00165.	Protein CBG02150.	0.540
CBG00165	CBG05455	A8WME2	A8WZX3	Protein CBG00165.	Protein CBG05455.	0.540
CBG00165	CBG07435	A8WME2	A8X4S1	Protein CBG00165.	Protein CBG07435.	0.469
CBG00165	CBG07523	A8WME2	A8X4M4	Protein CBG00165.	Protein CBG07523.	0.809
CBG00165	CBG07525	A8WME2	A8X4M3	Protein CBG00165.	Protein CBG07525.	0.540
CBG00165	CBG07528	A8WME2	A8X4M1	Protein CBG00165.	Protein CBG07528.	0.811
CBG00165	CBG08298	A8WME2	A8X688	Protein CBG00165.	Protein CBG08298.	0.811
CBG00165	CBG09790	A8WME2	A8X9M7	Protein CBG00165.	Protein CBG09790.	0.581
CBG00165	CBG10647	A8WME2	A8XBI5	Protein CBG00165.	Protein CBG10647.	0.469
CBG00165	CBG10648	A8WME2	A8XBI6	Protein CBG00165.	Protein CBG10648.	0.469
CBG00165	CBG13888	A8WME2	A8XJ41	Protein CBG00165.	Protein CBG13888.	0.509
CBG00165	CBG19573	A8WME2	A8XVX6	Protein CBG00165.	Protein CBG19573.	0.811
CBG00165	CBG23439	A8WME2	A8Y3W9	Protein CBG00165.	Protein CBG23439.	0.427
CBG00165	CBG27695	A8WME2	B6IJE0	Protein CBG00165.	Protein CBG27695.	0.506
CBG00165	Cbr-lin-61	A8WME2	A8XIG8	Protein CBG00165.	Protein CBR-LIN-61.	0.469
CBG00165	cec-1	A8WME2	A8XT38	Protein CBG00165.	Protein CBR-CEC-1.	0.505
CBG00165	lin-61	A8WME2	A8Y185	Protein CBG00165.	Protein CBG21916.	0.469
CBG00165	mes-2	A8WME2	A8XCE5	Protein CBG00165.	Protein CBR-MES-2.	0.540