STRINGSTRING
lin-18 lin-18 pqn-62 pqn-62 CBG14863 CBG14863 cogc-1 cogc-1 exc-6 exc-6 arx-5 arx-5 Cbr-vab-10 Cbr-vab-10 CBG15812 CBG15812 CBG15811 CBG15811 dgn-2 dgn-2 dgn-1 dgn-1 arx-6 arx-6 sqv-1 sqv-1 mrck-1 mrck-1 gck-1 gck-1 hlh-10 hlh-10 CBG19636 CBG19636 CBG19815 CBG19815 rig-6 rig-6 tig-3 tig-3 xnp-1 xnp-1 mks-1 mks-1 CBG25217 CBG25217 CBG25832 CBG25832 sqv-8 sqv-8 arx-1 arx-1 efn-4 efn-4 kal-1 kal-1 arx-4 arx-4 cdh-3 cdh-3 mig-5 mig-5 magu-2 magu-2 CBG01076 CBG01076 CBG01565 CBG01565 wsp-1 wsp-1 vang-1 vang-1 CBG03052 CBG03052 ccm-3 ccm-3 nphp-1 nphp-1 rsf-1 rsf-1 vab-23 vab-23 CBG02351 CBG02351 CBG03621 CBG03621 lin-17 lin-17 arx-7 arx-7 sqv-5 sqv-5 sdn-1 sdn-1 gck-3 gck-3 CBG07669 CBG07669 sqv-4 sqv-4 cash-1 cash-1 sqv-3 sqv-3 vab-2 vab-2 sqv-7 sqv-7 erm-1 erm-1 swsn-1 swsn-1 cdc-42 cdc-42 farl-11 farl-11 vab-1 vab-1 eps-8 eps-8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lin-18Protein CBR-LIN-18. (599 aa)
pqn-62Protein CBR-PQN-62. (1344 aa)
CBG14863Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (183 aa)
cogc-1Protein CBR-COGC-1. (522 aa)
exc-6Protein CBR-INFT-1. (901 aa)
arx-5Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (183 aa)
Cbr-vab-10Protein CBR-VAB-10. (1308 aa)
CBG15812Protein CBG15812. (2024 aa)
CBG15811Protein CBG15811. (3870 aa)
dgn-2Protein CBR-DGN-2. (395 aa)
dgn-1Protein CBR-DGN-1. (594 aa)
arx-6Actin-related protein 2/3 complex subunit 4; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament; Belongs to the ARPC4 family. (169 aa)
sqv-1Protein CBR-SQV-1. (456 aa)
mrck-1Protein CBR-MRCK-1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1586 aa)
gck-1Protein CBR-GCK-1. (898 aa)
hlh-10Protein CBR-HLH-10. (271 aa)
CBG19636Protein CBG19636. (554 aa)
CBG19815Protein CBG19815. (290 aa)
rig-6Protein CBR-RIG-6. (1297 aa)
tig-3Protein CBR-TIG-3. (225 aa)
xnp-1Protein CBR-XNP-1. (1333 aa)
mks-1Protein CBR-MKS-1. (384 aa)
CBG25217Protein CBG25217. (292 aa)
CBG25832Protein CBG25832. (61 aa)
sqv-8Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (356 aa)
arx-1Actin-related protein 3; Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament (By similarity). (426 aa)
efn-4Ephrin-4; Regulates the formation or stabilization of cell-cell contacts at several stages of epithelial morphogenesis. In early embryonic development, involved in ventral closure of the epidermis. During male tail morphogenesis, regulates precursor cell sorting together with mab-20 and allows the formation of distinct sensory rays. Probably acts as a ligand for lad-2 to regulate axon guidance of several neurons including SDQL, SDQR, SMD and PLN neurons during neurogenesis; Belongs to the ephrin family. (354 aa)
kal-1Protein CBR-KAL-1. (711 aa)
arx-4Protein CBR-ARX-4. (539 aa)
cdh-3Protein CBR-CDH-3. (3207 aa)
mig-5Protein CBR-MIG-5. (657 aa)
magu-2Protein CBR-TAG-117; Belongs to the MAGUK family. (663 aa)
CBG01076Protein CBG01076. (646 aa)
CBG01565Protein CBG01565. (188 aa)
wsp-1Protein CBR-WSP-1. (785 aa)
vang-1Vang-like protein. (532 aa)
CBG03052Protein CBG03052. (74 aa)
ccm-3Protein CBG03050. (215 aa)
nphp-1Protein CBR-NPHP-1. (675 aa)
rsf-1Protein CBG02930. (606 aa)
vab-23Protein CBR-VAB-23. (260 aa)
CBG02351Protein CBG02351. (91 aa)
CBG03621Protein CBG03621. (549 aa)
lin-17Protein CBR-LIN-17; Belongs to the G-protein coupled receptor Fz/Smo family. (557 aa)
arx-7Actin-related protein 2/3 complex subunit 5; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. (152 aa)
sqv-5Hexosyltransferase. (766 aa)
sdn-1Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (298 aa)
gck-3Protein CBR-GCK-3. (596 aa)
CBG07669Protein CBG07669. (2178 aa)
sqv-4UDP-glucose 6-dehydrogenase; Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (481 aa)
cash-1Protein CBR-CASH-1. (681 aa)
sqv-3Protein CBR-SQV-3. (285 aa)
vab-2Protein CBR-VAB-2; Belongs to the ephrin family. (242 aa)
sqv-7Protein CBR-SQV-7. (328 aa)
erm-1Protein CBR-ERM-1. (563 aa)
swsn-1Protein CBR-SWSN-1. (799 aa)
cdc-42Protein CBR-CDC-42. (191 aa)
farl-11Protein CBG13065. (976 aa)
vab-1Protein CBR-VAB-1. (1118 aa)
eps-8Protein CBR-EPS-8. (918 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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