(21 nodes) Histone H3-K36 methylation network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG27565	Protein CBG27565. (120 aa)
	CBG27308	Protein CBG27308. (370 aa)
	Cbr-met-1	Protein CBR-MET-1. (2074 aa)
	set-18	Protein CBR-SET-18. (352 aa)
	CBG24432	Protein CBG24432. (162 aa)
	CBG13673	Protein CBG13673. (233 aa)
	CBG13777	Protein CBG13777. (253 aa)
	CBG13779	Protein CBG13779. (201 aa)
	CBG16769	Protein CBG16769. (213 aa)
	CBG16771	Protein CBG16771. (326 aa)
	met-2	Protein CBR-MET-2. (1269 aa)
	CBG21076	Protein CBG21076. (109 aa)
	CBG22677	Protein CBG22677. (88 aa)
	CBG27287	Protein CBG27287. (181 aa)
	CBG24342	Protein CBG24342. (113 aa)
	CBG23979	Protein CBG23979. (441 aa)
	mes-4	Protein CBR-MES-4. (836 aa)
	set-27	Protein CBR-SET-27. (483 aa)
	CBG11115	Protein CBG11115. (197 aa)
	CBG11116	Protein CBG11116. (125 aa)
	lin-59	Protein CBR-LIN-59. (1320 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG11115	lin-59	A8XCF8	A8XEC9	Protein CBG11115.	Protein CBR-LIN-59.	0.529
CBG11116	lin-59	A8XCF9	A8XEC9	Protein CBG11116.	Protein CBR-LIN-59.	0.529
CBG13673	lin-59	A8XIG3	A8XEC9	Protein CBG13673.	Protein CBR-LIN-59.	0.529
CBG13777	lin-59	A8XIP1	A8XEC9	Protein CBG13777.	Protein CBR-LIN-59.	0.519
CBG16769	lin-59	A8XPS3	A8XEC9	Protein CBG16769.	Protein CBR-LIN-59.	0.529
CBG16771	lin-59	A8XPS5	A8XEC9	Protein CBG16771.	Protein CBR-LIN-59.	0.519
CBG21076	lin-59	A8XZ92	A8XEC9	Protein CBG21076.	Protein CBR-LIN-59.	0.529
CBG22677	lin-59	A8Y2X8	A8XEC9	Protein CBG22677.	Protein CBR-LIN-59.	0.519
CBG24432	lin-59	A8WKP8	A8XEC9	Protein CBG24432.	Protein CBR-LIN-59.	0.519
CBG27565	lin-59	B6IKM8	A8XEC9	Protein CBG27565.	Protein CBR-LIN-59.	0.452
Cbr-met-1	lin-59	A8XF20	A8XEC9	Protein CBR-MET-1.	Protein CBR-LIN-59.	0.529
lin-59	CBG11115	A8XEC9	A8XCF8	Protein CBR-LIN-59.	Protein CBG11115.	0.529
lin-59	CBG11116	A8XEC9	A8XCF9	Protein CBR-LIN-59.	Protein CBG11116.	0.529
lin-59	CBG13673	A8XEC9	A8XIG3	Protein CBR-LIN-59.	Protein CBG13673.	0.529
lin-59	CBG13777	A8XEC9	A8XIP1	Protein CBR-LIN-59.	Protein CBG13777.	0.519
lin-59	CBG16769	A8XEC9	A8XPS3	Protein CBR-LIN-59.	Protein CBG16769.	0.529
lin-59	CBG16771	A8XEC9	A8XPS5	Protein CBR-LIN-59.	Protein CBG16771.	0.519
lin-59	CBG21076	A8XEC9	A8XZ92	Protein CBR-LIN-59.	Protein CBG21076.	0.529
lin-59	CBG22677	A8XEC9	A8Y2X8	Protein CBR-LIN-59.	Protein CBG22677.	0.519
lin-59	CBG24432	A8XEC9	A8WKP8	Protein CBR-LIN-59.	Protein CBG24432.	0.519