(8 nodes) Regulation of gliogenesis network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mls-2	Protein CBR-MLS-2. (332 aa)
	CBG03842	Protein CBG03842. (438 aa)
	vab-3	Protein CBR-VAB-3. (290 aa)
	CBG04481	Protein CBG04481. (254 aa)
	ngn-1	Protein CBR-NGN-1. (200 aa)
	lin-32	Protein CBR-LIN-32. (148 aa)
	cnd-1	Protein CBR-CND-1. (198 aa)
	nfm-1	Protein CBR-NFM-1. (690 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG04481	cnd-1	A8WXS7	A8XZB7	Protein CBG04481.	Protein CBR-CND-1.	0.514
CBG04481	lin-32	A8WXS7	A8XJ96	Protein CBG04481.	Protein CBR-LIN-32.	0.541
CBG04481	ngn-1	A8WXS7	A8XJ45	Protein CBG04481.	Protein CBR-NGN-1.	0.650
CBG04481	vab-3	A8WXS7	A8WXS6	Protein CBG04481.	Protein CBR-VAB-3.	0.427
cnd-1	CBG04481	A8XZB7	A8WXS7	Protein CBR-CND-1.	Protein CBG04481.	0.514
cnd-1	ngn-1	A8XZB7	A8XJ45	Protein CBR-CND-1.	Protein CBR-NGN-1.	0.449
cnd-1	vab-3	A8XZB7	A8WXS6	Protein CBR-CND-1.	Protein CBR-VAB-3.	0.405
lin-32	CBG04481	A8XJ96	A8WXS7	Protein CBR-LIN-32.	Protein CBG04481.	0.541
lin-32	vab-3	A8XJ96	A8WXS6	Protein CBR-LIN-32.	Protein CBR-VAB-3.	0.715
ngn-1	CBG04481	A8XJ45	A8WXS7	Protein CBR-NGN-1.	Protein CBG04481.	0.650
ngn-1	cnd-1	A8XJ45	A8XZB7	Protein CBR-NGN-1.	Protein CBR-CND-1.	0.449
ngn-1	vab-3	A8XJ45	A8WXS6	Protein CBR-NGN-1.	Protein CBR-VAB-3.	0.492
vab-3	CBG04481	A8WXS6	A8WXS7	Protein CBR-VAB-3.	Protein CBG04481.	0.427
vab-3	cnd-1	A8WXS6	A8XZB7	Protein CBR-VAB-3.	Protein CBR-CND-1.	0.405
vab-3	lin-32	A8WXS6	A8XJ96	Protein CBR-VAB-3.	Protein CBR-LIN-32.	0.715
vab-3	ngn-1	A8WXS6	A8XJ45	Protein CBR-VAB-3.	Protein CBR-NGN-1.	0.492