(18 nodes) Postsynaptic density network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gras-1	Protein CBG23728. (245 aa)
	CBG01593	Protein CBG01593; Belongs to the G-protein coupled receptor 3 family. (1395 aa)
	mgl-2	Protein CBR-MGL-2. (1083 aa)
	shn-1	Protein CBR-SHN-1. (1137 aa)
	nsy-1	Protein CBR-NSY-1. (1577 aa)
	kel-8	Protein CBR-KEL-8. (677 aa)
	let-413	Protein CBR-LET-413. (702 aa)
	CBG12078	Protein CBG12078. (812 aa)
	nab-1	Protein CBR-NAB-1. (742 aa)
	lgc-55	Protein CBR-LGC-55; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (538 aa)
	add-1	Protein CBR-ADD-1. (804 aa)
	CBG16900	Protein CBG16900. (944 aa)
	dbn-1	Protein CBG18266. (672 aa)
	glr-1	Protein CBR-GLR-1. (978 aa)
	efk-1	Protein CBR-EFK-1. (772 aa)
	CBG21499	Protein CBG21499. (446 aa)
	CBG22703	Protein CBG22703. (914 aa)
	add-2	Protein CBR-ADD-2. (630 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG21499	glr-1	A8Y096	A8XT20	Protein CBG21499.	Protein CBR-GLR-1.	0.757
add-1	add-2	A8XK67	A8Y444	Protein CBR-ADD-1.	Protein CBR-ADD-2.	0.900
add-2	add-1	A8Y444	A8XK67	Protein CBR-ADD-2.	Protein CBR-ADD-1.	0.900
glr-1	CBG21499	A8XT20	A8Y096	Protein CBR-GLR-1.	Protein CBG21499.	0.757
glr-1	kel-8	A8XT20	A8X2R0	Protein CBR-GLR-1.	Protein CBR-KEL-8.	0.685
glr-1	let-413	A8XT20	A8X6Z6	Protein CBR-GLR-1.	Protein CBR-LET-413.	0.661
glr-1	mgl-2	A8XT20	A8WSB1	Protein CBR-GLR-1.	Protein CBR-MGL-2.	0.643
kel-8	glr-1	A8X2R0	A8XT20	Protein CBR-KEL-8.	Protein CBR-GLR-1.	0.685
let-413	glr-1	A8X6Z6	A8XT20	Protein CBR-LET-413.	Protein CBR-GLR-1.	0.661
let-413	shn-1	A8X6Z6	A8WT89	Protein CBR-LET-413.	Protein CBR-SHN-1.	0.527
mgl-2	glr-1	A8WSB1	A8XT20	Protein CBR-MGL-2.	Protein CBR-GLR-1.	0.643
shn-1	let-413	A8WT89	A8X6Z6	Protein CBR-SHN-1.	Protein CBR-LET-413.	0.527