STRINGSTRING
glt-5 glt-5 sfxn-1.2 sfxn-1.2 glt-7 glt-7 sfxn-1.4 sfxn-1.4 glt-3 glt-3 glt-4 glt-4 glt-6 glt-6 unc-47 unc-47 sfxn-1.3 sfxn-1.3 glt-1 glt-1 sfxn-2 sfxn-2 sfxn-1.5 sfxn-1.5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
glt-5Amino acid transporter. (490 aa)
sfxn-1.2Sidoreflexin. (329 aa)
glt-7Amino acid transporter. (527 aa)
sfxn-1.4Sidoreflexin. (326 aa)
glt-3Protein CBR-GLT-3. (546 aa)
glt-4Amino acid transporter. (514 aa)
glt-6Amino acid transporter. (540 aa)
unc-47Protein CBR-UNC-47. (484 aa)
sfxn-1.3Sidoreflexin. (329 aa)
glt-1Amino acid transporter. (492 aa)
sfxn-2Sidoreflexin. (319 aa)
sfxn-1.5Sidoreflexin. (324 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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