(14 nodes) Lateral plasma membrane network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lnkn-1	Protein CBR-TAG-256. (598 aa)
	let-23	Receptor protein-tyrosine kinase. (1379 aa)
	pat-3	Integrin beta; Belongs to the integrin beta chain family. (818 aa)
	tbcd-1	Protein CBG04073. (1228 aa)
	glp-1	Protein CBR-GLP-1. (1326 aa)
	unc-44.2	Protein CBG09473. (5237 aa)
	unc-44.1	Protein CBG09456. (1857 aa)
	CBG12797	Protein CBG12797. (315 aa)
	dlg-1	Protein CBR-DLG-1; Belongs to the MAGUK family. (1015 aa)
	CBG18580	Protein CBG18580. (3100 aa)
	unc-70	Spectrin beta chain; Belongs to the spectrin family. (2370 aa)
	tln-1	Protein CBG22153. (1036 aa)
	CBG25184	Protein CBG25184. (1573 aa)
	Cbr-sax-7	Protein CBR-SAX-7. (1402 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG25184	pat-3	B6IM09	A8WVF5	Protein CBG25184.	Integrin beta; Belongs to the integrin beta chain family.	0.985
CBG25184	tln-1	B6IM09	A8Y1N6	Protein CBG25184.	Protein CBG22153.	0.939
Cbr-sax-7	dlg-1	H8WH61	A8XKG7	Protein CBR-SAX-7.	Protein CBR-DLG-1; Belongs to the MAGUK family.	0.681
Cbr-sax-7	let-23	H8WH61	A8WPC3	Protein CBR-SAX-7.	Receptor protein-tyrosine kinase.	0.483
Cbr-sax-7	unc-44.1	H8WH61	A8X923	Protein CBR-SAX-7.	Protein CBG09456.	0.786
Cbr-sax-7	unc-44.2	H8WH61	A8X912	Protein CBR-SAX-7.	Protein CBG09473.	0.849
dlg-1	Cbr-sax-7	A8XKG7	H8WH61	Protein CBR-DLG-1; Belongs to the MAGUK family.	Protein CBR-SAX-7.	0.681
dlg-1	let-23	A8XKG7	A8WPC3	Protein CBR-DLG-1; Belongs to the MAGUK family.	Receptor protein-tyrosine kinase.	0.444
dlg-1	unc-70	A8XKG7	A8XUM5	Protein CBR-DLG-1; Belongs to the MAGUK family.	Spectrin beta chain; Belongs to the spectrin family.	0.416
glp-1	let-23	A8X345	A8WPC3	Protein CBR-GLP-1.	Receptor protein-tyrosine kinase.	0.401
let-23	Cbr-sax-7	A8WPC3	H8WH61	Receptor protein-tyrosine kinase.	Protein CBR-SAX-7.	0.483
let-23	dlg-1	A8WPC3	A8XKG7	Receptor protein-tyrosine kinase.	Protein CBR-DLG-1; Belongs to the MAGUK family.	0.444
let-23	glp-1	A8WPC3	A8X345	Receptor protein-tyrosine kinase.	Protein CBR-GLP-1.	0.401
pat-3	CBG25184	A8WVF5	B6IM09	Integrin beta; Belongs to the integrin beta chain family.	Protein CBG25184.	0.985
pat-3	tln-1	A8WVF5	A8Y1N6	Integrin beta; Belongs to the integrin beta chain family.	Protein CBG22153.	0.762
tln-1	CBG25184	A8Y1N6	B6IM09	Protein CBG22153.	Protein CBG25184.	0.939
tln-1	pat-3	A8Y1N6	A8WVF5	Protein CBG22153.	Integrin beta; Belongs to the integrin beta chain family.	0.762
unc-44.1	Cbr-sax-7	A8X923	H8WH61	Protein CBG09456.	Protein CBR-SAX-7.	0.786
unc-44.1	unc-70	A8X923	A8XUM5	Protein CBG09456.	Spectrin beta chain; Belongs to the spectrin family.	0.879
unc-44.2	Cbr-sax-7	A8X912	H8WH61	Protein CBG09473.	Protein CBR-SAX-7.	0.849