(14 nodes) Myosin binding network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rab-3	Protein CBR-RAB-3. (219 aa)
	lgl-1	Protein CBR-LGL-1. (969 aa)
	unc-96	Protein CBR-UNC-96. (404 aa)
	Cbr-ttn-1	Protein CBR-TTN-1. (2897 aa)
	mlc-4	Protein CBR-MLC-4. (172 aa)
	unc-87	Protein CBR-UNC-87. (547 aa)
	unc-97	LIM domain-containing protein. (353 aa)
	tom-1	Protein CBR-TOM-1. (1101 aa)
	lim-8	Protein CBR-LIM-8. (1011 aa)
	CBG16555	Protein CBG16555. (145 aa)
	trak-1	Protein CBG20286. (571 aa)
	CBG26587	Protein CBG26587. (599 aa)
	Cbr-mlc-1	Protein CBR-MLC-2.2. (170 aa)
	itr-1	Protein CBR-ITR-1, isoform a. (2921 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cbr-mlc-1	mlc-4	G2J6D1	A8X9U2	Protein CBR-MLC-2.2.	Protein CBR-MLC-4.	0.631
Cbr-ttn-1	mlc-4	A8X9J3	A8X9U2	Protein CBR-TTN-1.	Protein CBR-MLC-4.	0.469
lim-8	unc-96	A8XPG8	A8X5W8	Protein CBR-LIM-8.	Protein CBR-UNC-96.	0.748
lim-8	unc-97	A8XPG8	A8XKH8	Protein CBR-LIM-8.	LIM domain-containing protein.	0.827
mlc-4	Cbr-mlc-1	A8X9U2	G2J6D1	Protein CBR-MLC-4.	Protein CBR-MLC-2.2.	0.631
mlc-4	Cbr-ttn-1	A8X9U2	A8X9J3	Protein CBR-MLC-4.	Protein CBR-TTN-1.	0.469
unc-96	lim-8	A8X5W8	A8XPG8	Protein CBR-UNC-96.	Protein CBR-LIM-8.	0.748
unc-96	unc-97	A8X5W8	A8XKH8	Protein CBR-UNC-96.	LIM domain-containing protein.	0.851
unc-97	lim-8	A8XKH8	A8XPG8	LIM domain-containing protein.	Protein CBR-LIM-8.	0.827
unc-97	unc-96	A8XKH8	A8X5W8	LIM domain-containing protein.	Protein CBR-UNC-96.	0.851