(17 nodes) Carboxy-terminal domain protein kinase complex network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cit-1.2	Protein CBR-CIT-1.2. (792 aa)
	gtf-2h1	Protein CBG01668. (526 aa)
	cdk-7	Protein CBR-CDK-7; Belongs to the protein kinase superfamily. (343 aa)
	ccnk-1	Protein CBG04574; Belongs to the cyclin family. (260 aa)
	gtf-2h3	Protein CBG09872. (297 aa)
	gtf-2h2c	General transcription factor IIH subunit. (376 aa)
	CBG26441	Protein CBG26441. (111 aa)
	xpb-1	Protein CBG13269. (800 aa)
	CBG13719	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (482 aa)
	gtf-2h5	Protein CBG15257. (72 aa)
	CBG15501	Protein CBG15501. (583 aa)
	CBG16094	Protein CBG16094. (251 aa)
	cyh-1	Protein CBR-CYH-1. (320 aa)
	cdk-12	Protein CBR-CDTL-7. (642 aa)
	mnat-1	Protein CBR-MNAT-1. (343 aa)
	CBG22965	Protein CBG22965. (281 aa)
	cit-1.1	Protein CBR-CIT-1.1. (161 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG13719	CBG16094	A8XIJ6	A8XN46	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG16094.	0.961
CBG13719	CBG26441	A8XIJ6	B6IEX8	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG26441.	0.985
CBG13719	ccnk-1	A8XIJ6	A8WXY8	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG04574; Belongs to the cyclin family.	0.857
CBG13719	cdk-12	A8XIJ6	A8XT06	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-CDTL-7.	0.835
CBG13719	cdk-7	A8XIJ6	A8WWZ3	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-CDK-7; Belongs to the protein kinase superfamily.	0.975
CBG13719	cit-1.1	A8XIJ6	A8Y3K1	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-CIT-1.1.	0.734
CBG13719	cit-1.2	A8XIJ6	A8Y3K2	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-CIT-1.2.	0.734
CBG13719	cyh-1	A8XIJ6	A8XRR3	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-CYH-1.	0.990
CBG13719	gtf-2h1	A8XIJ6	A8WR44	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG01668.	0.985
CBG13719	gtf-2h2c	A8XIJ6	A8X9W6	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	General transcription factor IIH subunit.	0.999
CBG13719	gtf-2h3	A8XIJ6	A8X9V2	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG09872.	0.999
CBG13719	gtf-2h5	A8XIJ6	A8XLJ7	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG15257.	0.999
CBG13719	mnat-1	A8XIJ6	A8XXU1	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-MNAT-1.	0.998
CBG13719	xpb-1	A8XIJ6	A8XHG0	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG13269.	0.999
CBG15501	CBG16094	A8XM70	A8XN46	Protein CBG15501.	Protein CBG16094.	0.504
CBG15501	ccnk-1	A8XM70	A8WXY8	Protein CBG15501.	Protein CBG04574; Belongs to the cyclin family.	0.534
CBG15501	cdk-12	A8XM70	A8XT06	Protein CBG15501.	Protein CBR-CDTL-7.	0.787
CBG15501	cdk-7	A8XM70	A8WWZ3	Protein CBG15501.	Protein CBR-CDK-7; Belongs to the protein kinase superfamily.	0.598
CBG15501	cyh-1	A8XM70	A8XRR3	Protein CBG15501.	Protein CBR-CYH-1.	0.581
CBG15501	gtf-2h2c	A8XM70	A8X9W6	Protein CBG15501.	General transcription factor IIH subunit.	0.474