(13 nodes) Response to hermaphrodite contact network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pkd-2	Protein CBR-PKD-2. (716 aa)
	tax-6	Serine/threonine-protein phosphatase. (532 aa)
	rcan-1	Protein CBR-RCN-1. (209 aa)
	ttll-4	Tubulin polyglutamylase ttll-4; Polyglutamylase involved in side-chain polyglutamylation of tubulin in sensory cilia. Together with ttll-5 and ttll-11, required for male mating. (597 aa)
	ttll-11	Protein CBR-TTLL-11. (860 aa)
	kin-3	Protein CBR-KIN-3; Belongs to the protein kinase superfamily. (360 aa)
	lov-1	Protein CBR-LOV-1. (2185 aa)
	nphp-4	Protein CBR-NPHP-4. (1152 aa)
	ttll-5	Protein CBR-TTLL-5. (681 aa)
	nphp-1	Protein CBR-NPHP-1. (675 aa)
	stam-1	Protein CBR-STAM-1. (471 aa)
	kin-10	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (308 aa)
	cwp-5	Protein CBR-CWP-5. (726 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cwp-5	lov-1	A8WZG9	A8XHW5	Protein CBR-CWP-5.	Protein CBR-LOV-1.	0.665
kin-10	kin-3	A8WW67	A8XFP5	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Protein CBR-KIN-3; Belongs to the protein kinase superfamily.	0.999
kin-3	kin-10	A8XFP5	A8WW67	Protein CBR-KIN-3; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.999
lov-1	cwp-5	A8XHW5	A8WZG9	Protein CBR-LOV-1.	Protein CBR-CWP-5.	0.665
lov-1	nphp-1	A8XHW5	A8WSX6	Protein CBR-LOV-1.	Protein CBR-NPHP-1.	0.707
lov-1	nphp-4	A8XHW5	A8Y4D0	Protein CBR-LOV-1.	Protein CBR-NPHP-4.	0.712
lov-1	pkd-2	A8XHW5	A8XIK6	Protein CBR-LOV-1.	Protein CBR-PKD-2.	0.990
lov-1	stam-1	A8XHW5	A8WW10	Protein CBR-LOV-1.	Protein CBR-STAM-1.	0.671
nphp-1	lov-1	A8WSX6	A8XHW5	Protein CBR-NPHP-1.	Protein CBR-LOV-1.	0.707
nphp-1	nphp-4	A8WSX6	A8Y4D0	Protein CBR-NPHP-1.	Protein CBR-NPHP-4.	0.999
nphp-1	pkd-2	A8WSX6	A8XIK6	Protein CBR-NPHP-1.	Protein CBR-PKD-2.	0.767
nphp-4	lov-1	A8Y4D0	A8XHW5	Protein CBR-NPHP-4.	Protein CBR-LOV-1.	0.712
nphp-4	nphp-1	A8Y4D0	A8WSX6	Protein CBR-NPHP-4.	Protein CBR-NPHP-1.	0.999
nphp-4	pkd-2	A8Y4D0	A8XIK6	Protein CBR-NPHP-4.	Protein CBR-PKD-2.	0.753
pkd-2	lov-1	A8XIK6	A8XHW5	Protein CBR-PKD-2.	Protein CBR-LOV-1.	0.990
pkd-2	nphp-1	A8XIK6	A8WSX6	Protein CBR-PKD-2.	Protein CBR-NPHP-1.	0.767
pkd-2	nphp-4	A8XIK6	A8Y4D0	Protein CBR-PKD-2.	Protein CBR-NPHP-4.	0.753
rcan-1	tax-6	A8X823	A8X6D8	Protein CBR-RCN-1.	Serine/threonine-protein phosphatase.	0.975
stam-1	lov-1	A8WW10	A8XHW5	Protein CBR-STAM-1.	Protein CBR-LOV-1.	0.671
tax-6	rcan-1	A8X6D8	A8X823	Serine/threonine-protein phosphatase.	Protein CBR-RCN-1.	0.975