STRINGSTRING
sek-1 sek-1 nsy-7 nsy-7 unc-2 unc-2 CBG02060 CBG02060 nsy-1 nsy-1 calf-1 calf-1 egl-19 egl-19 mig-21 mig-21 unc-40 unc-40 nsy-4 nsy-4 rig-6 rig-6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sek-1Protein CBR-SEK-1; Belongs to the protein kinase superfamily. (352 aa)
nsy-7Protein CBR-NSY-7. (284 aa)
unc-2Protein CBR-UNC-2. (1536 aa)
CBG02060Protein CBG02060. (342 aa)
nsy-1Protein CBR-NSY-1. (1577 aa)
calf-1Protein CBR-CALF-1. (150 aa)
egl-19Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family. (1780 aa)
mig-21Protein CBR-MIG-21. (297 aa)
unc-40Protein CBR-UNC-40. (1407 aa)
nsy-4Protein CBR-NSY-4. (302 aa)
rig-6Protein CBR-RIG-6. (1297 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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