STRINGSTRING
cgh-1 cgh-1 par-3 par-3 npp-10 npp-10 ddx-23 ddx-23 par-6 par-6 parn-1 parn-1 dcap-1 dcap-1 drh-3 drh-3 ife-2.2 ife-2.2 ife-2.1 ife-2.1 stau-1 stau-1 soem-1 soem-1 car-1 car-1 tiar-2 tiar-2 pab-2 pab-2 nfki-1 nfki-1 CBG05761 CBG05761 rde-8 rde-8 CBG05915 CBG05915 Cbr-tag-30 Cbr-tag-30 paa-1 paa-1 disl-2 disl-2 mex-3 mex-3 CBG05145 CBG05145 mut-16 mut-16 alg-5 alg-5 CBG03703 CBG03703 rpb-7 rpb-7 vbh-1 vbh-1 snr-7 snr-7 rsd-6 rsd-6 CBG04018 CBG04018 CBG03992 CBG03992 rege-1 rege-1 sir-2.4 sir-2.4 ntl-2 ntl-2 CBG03667 CBG03667 CBG03431 CBG03431 gtbp-1 gtbp-1 tiar-1 tiar-1 mps-1 mps-1 snr-3 snr-3 lsm-1 lsm-1 patr-1 patr-1 CBG03126 CBG03126 ddx-19 ddx-19 pab-1 pab-1 dcap-2 dcap-2 lsm-3 lsm-3 CBG01824 CBG01824 CBG01454 CBG01454 pid-5 pid-5 CBG01440 CBG01440 CBG01003 CBG01003 puf-5 puf-5 snr-1 snr-1 ego-1 ego-1 gld-1 gld-1 CBG25098 CBG25098 CBG24721 CBG24721 CBG24565 CBG24565 CBG24231 CBG24231 CBG06798 CBG06798 CBG26117 CBG26117 ccf-1 ccf-1 CBG26848 CBG26848 CBG00587 CBG00587 CBG22588 CBG22588 CBG22527 CBG22527 CBG22302 CBG22302 ain-2 ain-2 ddx-27 ddx-27 lsm-6 lsm-6 lin-41 lin-41 rde-2 rde-2 oma-2 oma-2 cid-1 cid-1 mex-1 mex-1 CBG20849 CBG20849 CBG20666 CBG20666 pid-4 pid-4 ekl-1 ekl-1 CBG20325 CBG20325 CBG20097 CBG20097 CBG19344 CBG19344 Cbr-tag-153 Cbr-tag-153 CBG19180 CBG19180 spn-4 spn-4 hsf-1 hsf-1 ifet-1 ifet-1 pan-1 pan-1 nhl-2 nhl-2 atx-2 atx-2 rle-1 rle-1 ntl-9 ntl-9 csr-1 csr-1 eri-5 eri-5 larp-1 larp-1 panl-2 panl-2 CBG16678 CBG16678 let-711 let-711 inf-1 inf-1 ain-1 ain-1 CBG15689 CBG15689 par-2 par-2 CBG15103 CBG15103 edc-4 edc-4 pqn-37 pqn-37 CBG13909 CBG13909 mel-46 mel-46 ntl-3 ntl-3 rpb-4 rpb-4 puf-8 puf-8 lsm-4 lsm-4 gld-3 gld-3 dcs-1 dcs-1 sacy-1 sacy-1 asd-2 asd-2 gld-2 gld-2 mut-2 mut-2 edc-3 edc-3 glh-1 glh-1 CBG12321 CBG12321 CBG12465 CBG12465 gld-4 gld-4 gls-1 gls-1 Cbr-tag-250 Cbr-tag-250 prg-1 prg-1 mex-5 mex-5 glh-4 glh-4 larp-5 larp-5 pie-1 pie-1 snr-6 snr-6 mut-15 mut-15 ddx-17 ddx-17 rde-12 rde-12 CBG10060 CBG10060 mut-7 mut-7 panl-3 panl-3 Cbr-tag-76 Cbr-tag-76 CBG09882 CBG09882 laf-1 laf-1 CBG09775 CBG09775 mut-14 mut-14
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cgh-1Protein CBR-CGH-1; Belongs to the DEAD box helicase family. (429 aa)
par-3Protein CBR-PAR-3. (1332 aa)
npp-10Protein CBR-NPP-10. (1684 aa)
ddx-23Protein CBG09074; Belongs to the DEAD box helicase family. (747 aa)
par-6Protein CBR-PAR-6. (305 aa)
parn-1Protein CBG08556. (556 aa)
dcap-1Protein CBR-DCAP-1. (340 aa)
drh-3Protein CBR-DRH-3. (846 aa)
ife-2.2Protein CBR-IFE-2.2; Belongs to the eukaryotic initiation factor 4E family. (226 aa)
ife-2.1Protein CBR-IFE-2.1; Belongs to the eukaryotic initiation factor 4E family. (192 aa)
stau-1Protein CBG08071. (693 aa)
soem-1Protein CBG08021. (190 aa)
car-1Protein CBR-CAR-1. (336 aa)
tiar-2Protein CBR-TIAR-2. (411 aa)
pab-2Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (685 aa)
nfki-1Protein CBG07688. (622 aa)
CBG05761Protein CBG05761. (338 aa)
rde-8Protein CBG05767. (341 aa)
CBG05915Protein CBG05915. (546 aa)
Cbr-tag-30Protein CBR-TAG-30. (605 aa)
paa-1Protein CBR-PAA-1. (606 aa)
disl-2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (841 aa)
mex-3Protein CBR-MEX-3. (494 aa)
CBG05145Protein CBG05145; Belongs to the DEAD box helicase family. (400 aa)
mut-16Protein CBR-MUT-16. (1038 aa)
alg-5Histone H2B; Belongs to the histone H2B family. (919 aa)
CBG03703Protein CBG03703. (964 aa)
rpb-7Protein CBR-RPB-7. (174 aa)
vbh-1Protein CBR-VBH-1; Belongs to the DEAD box helicase family. (692 aa)
snr-7Small nuclear ribonucleoprotein G. (79 aa)
rsd-6Protein CBR-RSD-6. (813 aa)
CBG04018Protein CBG04018; Belongs to the DEAD box helicase family. (393 aa)
CBG03992RNA helicase. (750 aa)
rege-1Protein CBG03935. (660 aa)
sir-2.4Protein CBR-SIR-2.4. (324 aa)
ntl-2Protein CBR-NTL-2. (491 aa)
CBG03667Protein CBG03667; Belongs to the DEAD box helicase family. (565 aa)
CBG03431Protein CBG03431. (1032 aa)
gtbp-1Protein CBG03416. (501 aa)
tiar-1Protein CBR-TIAR-1. (403 aa)
mps-1Protein CBR-MPS-1. (308 aa)
snr-3Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (127 aa)
lsm-1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (125 aa)
patr-1Protein PAT1 homolog 1; RNA-binding protein involved in deadenylation-dependent decapping of mRNAs, leading to the degradation of mRNAs. Acts as a scaffold protein that connects deadenylation and decapping machinery (By similarity); Belongs to the PAT1 family. (864 aa)
CBG03126Protein CBG03126. (72 aa)
ddx-19Protein CBG03203. (1095 aa)
pab-1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (666 aa)
dcap-2Protein CBR-DCAP-2. (762 aa)
lsm-3Protein CBR-LSM-3. (84 aa)
CBG01824Protein CBG01824. (866 aa)
CBG01454Protein CBG01454. (636 aa)
pid-5Protein CBG01441. (137 aa)
CBG01440Protein CBG01440; Belongs to the peptidase M24B family. (942 aa)
CBG01003Protein CBG01003. (1885 aa)
puf-5Protein CBR-PUF-5. (453 aa)
snr-1Small nuclear ribonucleoprotein Sm D3. (136 aa)
ego-1Protein CBR-EGO-1. (1631 aa)
gld-1Protein CBR-GLD-1. (467 aa)
CBG25098Protein CBG25098. (203 aa)
CBG24721Protein CBG24721; Belongs to the UDP-glycosyltransferase family. (2174 aa)
CBG24565Protein CBG24565. (1157 aa)
CBG24231Protein CBG24231. (1050 aa)
CBG06798Probable ATP-dependent RNA helicase DDX55 homolog; Probable ATP-binding RNA helicase. (577 aa)
CBG26117Protein CBG26117. (82 aa)
ccf-1Protein CBG13315. (315 aa)
CBG26848Protein CBG26848. (184 aa)
CBG00587Protein CBG00587. (444 aa)
CBG22588Protein CBG22588. (1237 aa)
CBG22527Protein CBG22527. (553 aa)
CBG22302Protein CBG22302. (497 aa)
ain-2Protein CBR-AIN-2. (762 aa)
ddx-27Protein CBG22166; Belongs to the DEAD box helicase family. (753 aa)
lsm-6Protein CBR-LSM-6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (77 aa)
lin-41Protein CBR-LIN-41. (934 aa)
rde-2Protein CBR-RDE-2. (709 aa)
oma-2Protein CBR-OMA-2. (379 aa)
cid-1Protein CBR-CID-1. (1070 aa)
mex-1Protein CBR-MEX-1. (425 aa)
CBG20849Protein CBG20849. (92 aa)
CBG20666Protein CBG20666; Belongs to the DEAD box helicase family. (502 aa)
pid-4Protein CBG20484. (673 aa)
ekl-1Protein CBR-EKL-1. (644 aa)
CBG20325Protein CBG20325. (303 aa)
CBG20097Protein CBG20097. (383 aa)
CBG19344Protein CBG19344. (384 aa)
Cbr-tag-153Protein CBR-TAG-153. (760 aa)
CBG19180Protein CBG19180. (387 aa)
spn-4Protein CBR-SPN-4. (360 aa)
hsf-1Protein CBR-HSF-1. (504 aa)
ifet-1Protein CBR-IFET-1. (757 aa)
pan-1Protein CBR-PAN-1. (598 aa)
nhl-2Protein CBR-NHL-2. (1052 aa)
atx-2Protein CBR-ATX-2. (1051 aa)
rle-1Protein CBR-RLE-1. (1001 aa)
ntl-9Protein CBR-NTL-9. (314 aa)
csr-1Protein CBR-CSR-1. (1003 aa)
eri-5Protein CBR-ERI-5. (564 aa)
larp-1Protein CBR-LARP-1. (1159 aa)
panl-2Protein CBG16490. (1149 aa)
CBG16678Protein CBG16678. (1000 aa)
let-711Protein CBR-LET-711. (2627 aa)
inf-1Protein CBR-INF-1; Belongs to the DEAD box helicase family. (402 aa)
ain-1Protein CBR-AIN-1. (712 aa)
CBG15689Protein CBG15689. (192 aa)
par-2Protein CBR-PAR-2. (647 aa)
CBG15103Protein CBG15103. (557 aa)
edc-4Protein CBG14967. (841 aa)
pqn-37Protein CBR-PQN-37. (562 aa)
CBG13909ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (835 aa)
mel-46Protein CBR-MEL-46. (995 aa)
ntl-3Protein CBR-NTL-3. (727 aa)
rpb-4Protein CBR-RPB-4. (144 aa)
puf-8Protein CBR-PUF-8. (535 aa)
lsm-4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (124 aa)
gld-3Protein CBR-GLD-3. (956 aa)
dcs-1Protein CBR-DCS-1. (312 aa)
sacy-1Protein CBG12746; Belongs to the DEAD box helicase family. (631 aa)
asd-2Protein CBR-ASD-2. (397 aa)
gld-2Protein CBR-GLD-2. (870 aa)
mut-2Protein CBR-MUT-2. (446 aa)
edc-3Protein CBR-EDC-3. (557 aa)
glh-1Protein CBR-GLH-1. (817 aa)
CBG12321Protein CBG12321; Belongs to the argonaute family. (951 aa)
CBG12465RNA helicase. (542 aa)
gld-4Protein CBR-GLD-4. (893 aa)
gls-1Protein CBR-GLS-1. (1035 aa)
Cbr-tag-250Protein CBR-TAG-250. (620 aa)
prg-1Protein CBR-PRG-1; Belongs to the argonaute family. (826 aa)
mex-5Protein CBR-MEX-5. (474 aa)
glh-4Protein CBR-GLH-4. (1192 aa)
larp-5Protein CBR-LARP-5. (815 aa)
pie-1Protein CBR-PIE-1. (368 aa)
snr-6Probable small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (90 aa)
mut-15Protein CBR-MUT-15. (689 aa)
ddx-17Protein CBG11408; Belongs to the DEAD box helicase family. (559 aa)
rde-12Protein CBG11510. (1248 aa)
CBG10060Protein CBG10060. (816 aa)
mut-7Protein CBR-MUT-7. (927 aa)
panl-3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (642 aa)
Cbr-tag-76Protein CBR-TAG-76. (1076 aa)
CBG09882Protein CBG09882. (235 aa)
laf-1Protein CBR-LAF-1; Belongs to the DEAD box helicase family. (653 aa)
CBG09775Protein CBG09775. (820 aa)
mut-14Protein CBR-MUT-14; Belongs to the DEAD box helicase family. (527 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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