(10 nodes) Proteasome-activating activity network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG11069	Protein CBG11069; Belongs to the AAA ATPase family. (438 aa)
	CBG04772	Protein CBG04772; Belongs to the AAA ATPase family. (426 aa)
	rpt-4	Protein CBR-RPT-4; Belongs to the AAA ATPase family. (398 aa)
	rpt-3	Protein CBR-RPT-3; Belongs to the AAA ATPase family. (417 aa)
	rpt-2	Protein CBR-RPT-2; Belongs to the AAA ATPase family. (443 aa)
	rpt-6	Protein CBR-RPT-6; Belongs to the AAA ATPase family. (417 aa)
	CBG20339	Protein CBG20339; Belongs to the AAA ATPase family. (415 aa)
	rpt-1	Protein CBR-RPT-1; Belongs to the AAA ATPase family. (435 aa)
	rpt-5	Protein CBR-RPT-5; Belongs to the AAA ATPase family. (430 aa)
	CBG23920	Protein CBG23920; Belongs to the AAA ATPase family. (268 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG04772	CBG11069	A8WYF6	A8XCC1	Protein CBG04772; Belongs to the AAA ATPase family.	Protein CBG11069; Belongs to the AAA ATPase family.	0.975
CBG04772	CBG20339	A8WYF6	G2J711	Protein CBG04772; Belongs to the AAA ATPase family.	Protein CBG20339; Belongs to the AAA ATPase family.	0.959
CBG04772	CBG23920	A8WYF6	A8WJL1	Protein CBG04772; Belongs to the AAA ATPase family.	Protein CBG23920; Belongs to the AAA ATPase family.	0.958
CBG04772	rpt-1	A8WYF6	A8Y451	Protein CBG04772; Belongs to the AAA ATPase family.	Protein CBR-RPT-1; Belongs to the AAA ATPase family.	0.994
CBG04772	rpt-2	A8WYF6	A8X9H6	Protein CBG04772; Belongs to the AAA ATPase family.	Protein CBR-RPT-2; Belongs to the AAA ATPase family.	0.995
CBG04772	rpt-3	A8WYF6	A8X7S9	Protein CBG04772; Belongs to the AAA ATPase family.	Protein CBR-RPT-3; Belongs to the AAA ATPase family.	0.900
CBG04772	rpt-4	A8WYF6	A8X3Y0	Protein CBG04772; Belongs to the AAA ATPase family.	Protein CBR-RPT-4; Belongs to the AAA ATPase family.	0.992
CBG04772	rpt-5	A8WYF6	A8XFS9	Protein CBG04772; Belongs to the AAA ATPase family.	Protein CBR-RPT-5; Belongs to the AAA ATPase family.	0.995
CBG04772	rpt-6	A8WYF6	A8XE05	Protein CBG04772; Belongs to the AAA ATPase family.	Protein CBR-RPT-6; Belongs to the AAA ATPase family.	0.959
CBG11069	CBG04772	A8XCC1	A8WYF6	Protein CBG11069; Belongs to the AAA ATPase family.	Protein CBG04772; Belongs to the AAA ATPase family.	0.975
CBG11069	CBG20339	A8XCC1	G2J711	Protein CBG11069; Belongs to the AAA ATPase family.	Protein CBG20339; Belongs to the AAA ATPase family.	0.967
CBG11069	CBG23920	A8XCC1	A8WJL1	Protein CBG11069; Belongs to the AAA ATPase family.	Protein CBG23920; Belongs to the AAA ATPase family.	0.966
CBG11069	rpt-1	A8XCC1	A8Y451	Protein CBG11069; Belongs to the AAA ATPase family.	Protein CBR-RPT-1; Belongs to the AAA ATPase family.	0.996
CBG11069	rpt-2	A8XCC1	A8X9H6	Protein CBG11069; Belongs to the AAA ATPase family.	Protein CBR-RPT-2; Belongs to the AAA ATPase family.	0.902
CBG11069	rpt-3	A8XCC1	A8X7S9	Protein CBG11069; Belongs to the AAA ATPase family.	Protein CBR-RPT-3; Belongs to the AAA ATPase family.	0.975
CBG11069	rpt-4	A8XCC1	A8X3Y0	Protein CBG11069; Belongs to the AAA ATPase family.	Protein CBR-RPT-4; Belongs to the AAA ATPase family.	0.996
CBG11069	rpt-5	A8XCC1	A8XFS9	Protein CBG11069; Belongs to the AAA ATPase family.	Protein CBR-RPT-5; Belongs to the AAA ATPase family.	0.996
CBG11069	rpt-6	A8XCC1	A8XE05	Protein CBG11069; Belongs to the AAA ATPase family.	Protein CBR-RPT-6; Belongs to the AAA ATPase family.	0.967
CBG20339	CBG04772	G2J711	A8WYF6	Protein CBG20339; Belongs to the AAA ATPase family.	Protein CBG04772; Belongs to the AAA ATPase family.	0.959
CBG20339	CBG11069	G2J711	A8XCC1	Protein CBG20339; Belongs to the AAA ATPase family.	Protein CBG11069; Belongs to the AAA ATPase family.	0.967