STRINGSTRING
rbd-1 rbd-1 mca-3 mca-3 pept-1 pept-1 lon-1 lon-1 clk-1 clk-1 Cbr-mcd-1 Cbr-mcd-1 tax-4 tax-4 arr-1 arr-1 unc-104 unc-104 mboa-6 mboa-6 rad-8 rad-8 swsn-1 swsn-1 grk-2 grk-2 ncr-1 ncr-1 peb-1 peb-1 CBG25106 CBG25106 dab-1 dab-1 kin-29 kin-29 hlh-14 hlh-14
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rbd-1Protein CBR-RBD-1. (877 aa)
mca-3Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1159 aa)
pept-1Protein CBR-PEPT-1. (838 aa)
lon-1Protein CBR-LON-1; Belongs to the CRISP family. (310 aa)
clk-15-demethoxyubiquinone hydroxylase, mitochondrial; Catalyzes the hydroxylation of 2-polyprenyl-3-methyl-6- methoxy-1,4-benzoquinol (DMQH2) during ubiquinone biosynthesis. Has also a structural role in the COQ enzyme complex, stabilizing other COQ polypeptides. Involved in lifespan determination in a ubiquinone- independent manner. (217 aa)
Cbr-mcd-1Protein CBR-MCD-1. (869 aa)
tax-4Protein CBR-TAX-4. (726 aa)
arr-1Protein CBR-ARR-1. (450 aa)
unc-104Protein CBR-UNC-104; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1699 aa)
mboa-6Protein CBG11740; Belongs to the membrane-bound acyltransferase family. (475 aa)
rad-8Protein CBR-RAD-8. (366 aa)
swsn-1Protein CBR-SWSN-1. (799 aa)
grk-2Protein CBR-GRK-2. (377 aa)
ncr-1Protein CBR-NCR-1. (1431 aa)
peb-1Protein CBR-PEB-1. (432 aa)
CBG25106Protein CBG25106. (639 aa)
dab-1Protein CBR-DAB-1. (483 aa)
kin-29Serine/threonine-protein kinase kin-29; Regulates chemoreceptor expression by phosphorylating the hda-4 class II histone deacetylase (HDAC) and inhibiting the gene repression functions of hda-4 and the mef-2 transcription factor, enabling the correct sensing and transduction of food signals. Role in determining body size, the dauer decision and serotonin-mediated egg laying. May modulate the Sma/Mab pathway and regulates development in the later larval stages (By similarity). (813 aa)
hlh-14Protein CBR-HLH-14. (150 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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