(71 nodes) Regulation of gene expression, epigenetic network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ppm-1.d	Protein CBG15663. (749 aa)
	CBG24491	Protein CBG24491. (402 aa)
	CBG00165	Protein CBG00165. (652 aa)
	rrf-3	Protein CBR-RRF-3. (1766 aa)
	znfx-1	Protein CBG00906. (2047 aa)
	CBG02011	Protein CBG02011. (556 aa)
	fox-1	Protein CBR-FOX-1. (433 aa)
	CBG02150	Protein CBG02150. (727 aa)
	Cbr-rha-1	Protein CBR-RHA-1. (1402 aa)
	mix-1	Protein CBR-MIX-1. (1296 aa)
	ifb-1	Protein CBR-IFB-1; Belongs to the intermediate filament family. (558 aa)
	CBG02494	Protein CBG02494. (72 aa)
	dpy-26	Protein CBR-DPY-26. (1261 aa)
	CBG05455	Protein CBG05455. (705 aa)
	CBG05711	Protein CBG05711. (664 aa)
	ifc-1	Protein CBR-IFC-1; Belongs to the intermediate filament family. (482 aa)
	mes-4	Protein CBR-MES-4. (836 aa)
	spr-5	Protein CBR-SPR-5. (924 aa)
	ifd-2	Protein CBR-IFD-2; Belongs to the intermediate filament family. (473 aa)
	CBG09341	Protein CBG09341. (129 aa)
	CBG09790	Protein CBG09790. (516 aa)
	CBG10398	Protein CBG10398. (203 aa)
	CBG10404	Protein CBG10404. (645 aa)
	mes-2	Protein CBR-MES-2. (930 aa)
	sdc-3	Protein CBR-SDC-3. (1683 aa)
	sea-1.2	Protein CBR-SEA-1. (566 aa)
	CBG11775	Protein CBG11775. (229 aa)
	lmn-1	Protein CBR-LMN-1; Belongs to the intermediate filament family. (565 aa)
	CBG13492	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (332 aa)
	CBG13506	Protein CBG13506. (317 aa)
	CBG13679	Protein CBG13679. (380 aa)
	CBG13807	Protein CBG13807. (414 aa)
	spat-3	Protein CBR-SPAT-3. (2691 aa)
	ifa-4	Protein CBR-IFA-4; Belongs to the intermediate filament family. (599 aa)
	ifd-1	Protein CBR-IFD-1; Belongs to the intermediate filament family. (589 aa)
	mrg-1	Protein CBR-MRG-1. (354 aa)
	ifp-1	Protein CBR-IFP-1; Belongs to the intermediate filament family. (903 aa)
	CBG16054	Protein CBG16054; Belongs to the intermediate filament family. (656 aa)
	Cbr-ifa-3	Protein CBR-IFA-3; Belongs to the intermediate filament family. (576 aa)
	CBG16384	Protein CBG16384; Belongs to the intermediate filament family. (581 aa)
	sex-1	Protein CBR-SEX-1. (549 aa)
	CBG17113	Protein CBG17113. (296 aa)
	ifa-1	Protein CBR-IFA-1; Belongs to the intermediate filament family. (566 aa)
	CBG17864	Protein CBG17864. (525 aa)
	hat-1	Protein CBR-TAG-235. (411 aa)
	CBG18142	Protein CBG18142. (1438 aa)
	met-2	Protein CBR-MET-2. (1269 aa)
	sea-2	Protein CBR-SEA-2. (2311 aa)
	CBG18451	Protein CBG18451. (192 aa)
	rde-1	Protein CBR-RDE-1. (987 aa)
	CBG19535	Protein CBG19535. (464 aa)
	CBG19536	Protein CBG19536. (384 aa)
	CBG19681	Protein CBG19681. (142 aa)
	dpy-27	Protein CBR-DPY-27. (1575 aa)
	CBG20160	Protein CBG20160. (174 aa)
	tam-1	Protein CBR-TAM-1. (954 aa)
	CBG21443	Protein CBG21443. (462 aa)
	CBG21613	Protein CBG21613. (303 aa)
	dpy-30	Protein CBR-DPY-30. (123 aa)
	CBG23216	Protein CBG23216. (313 aa)
	CBG26680	Protein CBG26680. (94 aa)
	CBG27695	Protein CBG27695. (506 aa)
	CBG27565	Protein CBG27565. (120 aa)
	sdc-1	Protein CBR-SDC-1. (636 aa)
	CBG29114	Protein CBG29114. (503 aa)
	nrde-2	Protein CBR-NRDE-2. (951 aa)
	ifb-2	Protein CBR-IFB-2, isoform a; Belongs to the intermediate filament family. (542 aa)
	mbd-2	Methyl-binding protein-2. (210 aa)
	ifc-2	Intermediate filament protein ifc-2; Cytoplasmic intermediate filaments provide mechanical strength to cells. (621 aa)
	xol-1	XO lethal protein 1 homolog; Belongs to the GHMP kinase family. Xol-1 subfamily. (426 aa)
	lin-28	Protein lin-28; Heterochronic protein which controls the choice of stage specific cell fates. Regulates the timing of the second larval stage events (L2 events) in the hypodermis (By similarity); Belongs to the lin-28 family. (237 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00165	CBG02011	A8WME2	A8WRT0	Protein CBG00165.	Protein CBG02011.	0.540
CBG00165	CBG02150	A8WME2	A8WS26	Protein CBG00165.	Protein CBG02150.	0.540
CBG00165	CBG05455	A8WME2	A8WZX3	Protein CBG00165.	Protein CBG05455.	0.540
CBG00165	CBG09790	A8WME2	A8X9M7	Protein CBG00165.	Protein CBG09790.	0.581
CBG00165	CBG27695	A8WME2	B6IJE0	Protein CBG00165.	Protein CBG27695.	0.506
CBG00165	mes-2	A8WME2	A8XCE5	Protein CBG00165.	Protein CBR-MES-2.	0.540
CBG00165	spat-3	A8WME2	A8XK29	Protein CBG00165.	Protein CBR-SPAT-3.	0.763
CBG02011	CBG00165	A8WRT0	A8WME2	Protein CBG02011.	Protein CBG00165.	0.540
CBG02011	CBG02150	A8WRT0	A8WS26	Protein CBG02011.	Protein CBG02150.	0.540
CBG02011	CBG05455	A8WRT0	A8WZX3	Protein CBG02011.	Protein CBG05455.	0.540
CBG02011	CBG09790	A8WRT0	A8X9M7	Protein CBG02011.	Protein CBG09790.	0.540
CBG02011	CBG27695	A8WRT0	B6IJE0	Protein CBG02011.	Protein CBG27695.	0.506
CBG02011	mes-2	A8WRT0	A8XCE5	Protein CBG02011.	Protein CBR-MES-2.	0.540
CBG02011	spat-3	A8WRT0	A8XK29	Protein CBG02011.	Protein CBR-SPAT-3.	0.763
CBG02150	CBG00165	A8WS26	A8WME2	Protein CBG02150.	Protein CBG00165.	0.540
CBG02150	CBG02011	A8WS26	A8WRT0	Protein CBG02150.	Protein CBG02011.	0.540
CBG02150	CBG05455	A8WS26	A8WZX3	Protein CBG02150.	Protein CBG05455.	0.540
CBG02150	CBG09790	A8WS26	A8X9M7	Protein CBG02150.	Protein CBG09790.	0.540
CBG02150	CBG27695	A8WS26	B6IJE0	Protein CBG02150.	Protein CBG27695.	0.506
CBG02150	mes-2	A8WS26	A8XCE5	Protein CBG02150.	Protein CBR-MES-2.	0.540