(28 nodes) Alcohol binding network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nap-1	Protein CBR-NAP-1; Belongs to the nucleosome assembly protein (NAP) family. (318 aa)
	CBG24492	Protein CBG24492. (215 aa)
	CBG24914	Protein CBG24914. (195 aa)
	CBG03046	Protein CBG03046. (823 aa)
	erl-1	Protein CBR-ERL-1. (308 aa)
	tpk-1	Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family. (225 aa)
	obr-3	Protein CBR-OBR-3. (797 aa)
	spe-41	Protein CBR-SPE-41. (807 aa)
	ncr-1	Protein CBR-NCR-1. (1431 aa)
	sto-2	Protein CBR-STO-2. (320 aa)
	CBG14703	Protein CBG14703. (1196 aa)
	mec-2	Protein CBR-MEC-2. (317 aa)
	trp-2	Protein CBR-TRP-2; Belongs to the transient receptor (TC 1.A.4) family. (965 aa)
	chup-1	Protein CBR-TAG-130. (760 aa)
	itr-1	Protein CBR-ITR-1, isoform a. (2921 aa)
	pll-1	Phosphoinositide phospholipase C. (1083 aa)
	CBG15798	Protein CBG15798. (197 aa)
	ncr-2	Protein CBR-NCR-2. (1222 aa)
	sto-1	Protein CBR-STO-1. (341 aa)
	sto-4	Protein CBR-STO-4. (281 aa)
	sto-6	Protein CBR-STO-6. (298 aa)
	prmn-1	Protein CBG17350. (867 aa)
	grd-1	Protein CBR-GRD-1. (1210 aa)
	lpr-4	Protein CBR-LPR-4. (358 aa)
	lpr-6	Protein CBR-LPR-6. (265 aa)
	lpr-3	Protein CBR-LPR-3. (587 aa)
	CBG18327	Protein CBG18327. (713 aa)
	trp-1	Protein CBR-TRP-1; Belongs to the transient receptor (TC 1.A.4) family. (1055 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chup-1	ncr-1	A8XM97	A8XK09	Protein CBR-TAG-130.	Protein CBR-NCR-1.	0.582
erl-1	itr-1	A8X0H4	H8WGV2	Protein CBR-ERL-1.	Protein CBR-ITR-1, isoform a.	0.473
erl-1	sto-6	A8X0H4	A8XQR5	Protein CBR-ERL-1.	Protein CBR-STO-6.	0.650
itr-1	erl-1	H8WGV2	A8X0H4	Protein CBR-ITR-1, isoform a.	Protein CBR-ERL-1.	0.473
lpr-3	lpr-4	A8XRC6	A8XRC3	Protein CBR-LPR-3.	Protein CBR-LPR-4.	0.497
lpr-3	lpr-6	A8XRC6	A8XRC5	Protein CBR-LPR-3.	Protein CBR-LPR-6.	0.957
lpr-4	lpr-3	A8XRC3	A8XRC6	Protein CBR-LPR-4.	Protein CBR-LPR-3.	0.497
lpr-4	lpr-6	A8XRC3	A8XRC5	Protein CBR-LPR-4.	Protein CBR-LPR-6.	0.995
lpr-6	lpr-3	A8XRC5	A8XRC6	Protein CBR-LPR-6.	Protein CBR-LPR-3.	0.957
lpr-6	lpr-4	A8XRC5	A8XRC3	Protein CBR-LPR-6.	Protein CBR-LPR-4.	0.995
ncr-1	chup-1	A8XK09	A8XM97	Protein CBR-NCR-1.	Protein CBR-TAG-130.	0.582
spe-41	trp-1	A8X9N3	A8XT14	Protein CBR-SPE-41.	Protein CBR-TRP-1; Belongs to the transient receptor (TC 1.A.4) family.	0.903
sto-6	erl-1	A8XQR5	A8X0H4	Protein CBR-STO-6.	Protein CBR-ERL-1.	0.650
trp-1	spe-41	A8XT14	A8X9N3	Protein CBR-TRP-1; Belongs to the transient receptor (TC 1.A.4) family.	Protein CBR-SPE-41.	0.903