(39 nodes) Gland development network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG10416	Protein CBG10416. (252 aa)
	CBG24705	Protein CBG24705. (101 aa)
	pyr-1	Protein CBR-PYR-1. (2090 aa)
	CBG00767	Protein CBG00767. (614 aa)
	Cbr-tag-293	Protein CBR-TAG-293. (250 aa)
	CBG03731	Protein CBG03731. (250 aa)
	hlh-6	Protein CBR-HLH-6. (144 aa)
	CBG06799	Protein CBG06799. (112 aa)
	phat-6	Protein CBR-PHAT-6. (199 aa)
	pha-2	Protein CBR-PHA-2. (211 aa)
	pqn-8	Protein CBR-PQN-8. (406 aa)
	CBG10495	Protein CBG10495. (248 aa)
	CBG10496	Protein CBG10496. (248 aa)
	CBG10427	Protein CBG10427. (246 aa)
	CBG10451	Protein CBG10451. (415 aa)
	CBG10452	Protein CBG10452. (428 aa)
	CBG10453	Protein CBG10453. (428 aa)
	CBG10454	Protein CBG10454. (432 aa)
	CBG10455	Protein CBG10455. (252 aa)
	phat-2	Protein CBR-PHAT-2. (250 aa)
	unc-52	Protein CBR-UNC-52. (2481 aa)
	CBG11138	Protein CBG11138. (226 aa)
	CBG11139	Protein CBG11139. (284 aa)
	unc-89	Protein CBR-UNC-89. (6561 aa)
	tnt-4	Protein CBR-TNT-4. (308 aa)
	CBG12230	Protein CBG12230. (124 aa)
	CBG17922	Protein CBG17922. (245 aa)
	hlh-10	Protein CBR-HLH-10. (271 aa)
	CBG21037	Protein CBG21037. (273 aa)
	CBG21039	Protein CBG21039. (130 aa)
	CBG22010	Sulfhydryl oxidase. (162 aa)
	CBG22294	Protein CBG22294. (260 aa)
	CBG22844	Protein CBG22844. (127 aa)
	CBG22851	Protein CBG22851. (180 aa)
	CBG23485	Protein CBG23485. (145 aa)
	sma-1	Protein CBR-SMA-1. (4156 aa)
	CBG25505	Protein CBG25505. (207 aa)
	dod-6.1	Protein CBG25878. (60 aa)
	CBG06798	Probable ATP-dependent RNA helicase DDX55 homolog; Probable ATP-binding RNA helicase. (577 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00767	CBG10416	A8WNS3	A8XB57	Protein CBG00767.	Protein CBG10416.	0.430
CBG00767	CBG10427	A8WNS3	A8XB68	Protein CBG00767.	Protein CBG10427.	0.430
CBG00767	CBG21037	A8WNS3	A8XZ83	Protein CBG00767.	Protein CBG21037.	0.532
CBG00767	CBG21039	A8WNS3	A8XZ85	Protein CBG00767.	Protein CBG21039.	0.532
CBG00767	Cbr-tag-293	A8WNS3	A8WQC4	Protein CBG00767.	Protein CBR-TAG-293.	0.430
CBG00767	hlh-6	A8WNS3	A8X2T8	Protein CBG00767.	Protein CBR-HLH-6.	0.736
CBG00767	phat-6	A8WNS3	A8X4C0	Protein CBG00767.	Protein CBR-PHAT-6.	0.629
CBG00767	pqn-8	A8WNS3	A8X9Z2	Protein CBG00767.	Protein CBR-PQN-8.	0.822
CBG03731	unc-89	A8WWK7	A8XEH5	Protein CBG03731.	Protein CBR-UNC-89.	0.543
CBG10416	CBG00767	A8XB57	A8WNS3	Protein CBG10416.	Protein CBG00767.	0.430
CBG10416	unc-89	A8XB57	A8XEH5	Protein CBG10416.	Protein CBR-UNC-89.	0.543
CBG10427	CBG00767	A8XB68	A8WNS3	Protein CBG10427.	Protein CBG00767.	0.430
CBG10427	unc-89	A8XB68	A8XEH5	Protein CBG10427.	Protein CBR-UNC-89.	0.543
CBG10451	CBG10452	A8XB90	A8XB91	Protein CBG10451.	Protein CBG10452.	0.901
CBG10451	CBG10453	A8XB90	A8XB92	Protein CBG10451.	Protein CBG10453.	0.901
CBG10451	CBG10454	A8XB90	A8XB93	Protein CBG10451.	Protein CBG10454.	0.902
CBG10452	CBG10451	A8XB91	A8XB90	Protein CBG10452.	Protein CBG10451.	0.901
CBG10452	CBG10453	A8XB91	A8XB92	Protein CBG10452.	Protein CBG10453.	0.900
CBG10452	CBG10454	A8XB91	A8XB93	Protein CBG10452.	Protein CBG10454.	0.902
CBG10453	CBG10451	A8XB92	A8XB90	Protein CBG10453.	Protein CBG10451.	0.901