(44 nodes) Chromosome localization network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hpl-2	Protein CBR-HPL-2. (305 aa)
	smo-1	Small ubiquitin-related modifier. (95 aa)
	CBG25886	Protein CBG25886. (111 aa)
	CBG25469	Protein CBG25469. (244 aa)
	ndc-80	Protein CBR-NDC-80. (599 aa)
	CBG23216	Protein CBG23216. (313 aa)
	CBG22694	Protein CBG22694. (552 aa)
	CBG22081	Protein CBG22081. (146 aa)
	knl-3	Protein CBR-KNL-3. (356 aa)
	oma-2	Protein CBR-OMA-2. (379 aa)
	CBG21613	Protein CBG21613. (303 aa)
	CBG21443	Protein CBG21443. (462 aa)
	csc-1	Protein CBR-CSC-1. (204 aa)
	rbx-1	Protein CBR-RBX-1. (110 aa)
	spdl-1	Protein CBR-SPDL-1. (501 aa)
	mdf-1	Protein CBR-MDF-1. (681 aa)
	cul-2	Protein CBR-CUL-2; Belongs to the cullin family. (850 aa)
	CBG17113	Protein CBG17113. (296 aa)
	CBG16930	Protein CBG16930. (204 aa)
	CBG16929	Protein CBG16929. (126 aa)
	rod-1	Protein CBR-ROD-1. (2213 aa)
	mrg-1	Protein CBR-MRG-1. (354 aa)
	cec-8	Protein CBR-CEC-8. (631 aa)
	zyg-11	Protein CBR-ZYG-11. (807 aa)
	gei-17	Protein CBR-GEI-17. (675 aa)
	CBG12411	Protein CBG12411. (518 aa)
	hcp-4	Protein CBR-HCP-4. (662 aa)
	rec-8	Protein CBR-REC-8. (844 aa)
	CBG12030	Protein CBG12030. (233 aa)
	CBG11828	Protein CBG11828. (55 aa)
	CBG11107	Protein CBG11107. (896 aa)
	rmd-1	Protein CBR-RMD-1. (226 aa)
	him-10	Protein CBR-HIM-10. (637 aa)
	CBG07183	Protein CBG07183. (780 aa)
	cec-4	Protein CBR-CEC-4. (311 aa)
	cec-5	Protein CBR-CEC-5. (398 aa)
	spd-3	Protein CBG05380. (499 aa)
	icp-1	Protein CBR-ICP-1. (516 aa)
	Cbr-rmd-6	Protein CBR-RMD-6. (255 aa)
	CBG02222	Protein CBG02222. (436 aa)
	trpp-12	Protein CBG02113. (389 aa)
	Cbr-gadr-3	Protein CBR-GADR-3. (662 aa)
	hcp-6	Condensin-2 complex subunit. (1739 aa)
	nud-2	Protein CBR-NUD-2. (281 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02222	CBG11828	A8WS88	A8XE43	Protein CBG02222.	Protein CBG11828.	0.419
CBG02222	CBG12411	A8WS88	A8XFD3	Protein CBG02222.	Protein CBG12411.	0.540
CBG02222	CBG25886	A8WS88	B6IHP1	Protein CBG02222.	Protein CBG25886.	0.424
CBG02222	csc-1	A8WS88	A8XYC2	Protein CBG02222.	Protein CBR-CSC-1.	0.494
CBG02222	him-10	A8WS88	A8X7U1	Protein CBG02222.	Protein CBR-HIM-10.	0.489
CBG02222	icp-1	A8WS88	A8WWZ8	Protein CBG02222.	Protein CBR-ICP-1.	0.540
CBG02222	ndc-80	A8WS88	A8Y4F8	Protein CBG02222.	Protein CBR-NDC-80.	0.605
CBG02222	rod-1	A8WS88	A8XPF4	Protein CBG02222.	Protein CBR-ROD-1.	0.424
CBG02222	smo-1	A8WS88	G2J6V9	Protein CBG02222.	Small ubiquitin-related modifier.	0.419
CBG07183	CBG22694	A8X3I9	A8Y2Y9	Protein CBG07183.	Protein CBG22694.	0.540
CBG07183	Cbr-gadr-3	A8X3I9	A8WKI3	Protein CBG07183.	Protein CBR-GADR-3.	0.540
CBG07183	cul-2	A8X3I9	A8XSC0	Protein CBG07183.	Protein CBR-CUL-2; Belongs to the cullin family.	0.676
CBG07183	rbx-1	A8X3I9	A8XVE5	Protein CBG07183.	Protein CBR-RBX-1.	0.444
CBG07183	zyg-11	A8X3I9	A8XHZ0	Protein CBG07183.	Protein CBR-ZYG-11.	0.540
CBG11828	CBG02222	A8XE43	A8WS88	Protein CBG11828.	Protein CBG02222.	0.419
CBG11828	CBG12411	A8XE43	A8XFD3	Protein CBG11828.	Protein CBG12411.	0.419
CBG11828	gei-17	A8XE43	A8XFG1	Protein CBG11828.	Protein CBR-GEI-17.	0.970
CBG11828	icp-1	A8XE43	A8WWZ8	Protein CBG11828.	Protein CBR-ICP-1.	0.442
CBG11828	rbx-1	A8XE43	A8XVE5	Protein CBG11828.	Protein CBR-RBX-1.	0.789
CBG11828	smo-1	A8XE43	G2J6V9	Protein CBG11828.	Small ubiquitin-related modifier.	0.901