(7 nodes) Regulation of endosome size network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vps-18	Protein CBG13485. (940 aa)
	sorf-2	Protein CBG24676. (1417 aa)
	rab-7	Protein CBR-RAB-7. (209 aa)
	bec-1	Protein CBR-BEC-1. (375 aa)
	vps-34	Phosphatidylinositol 3-kinase catalytic subunit type 3. (895 aa)
	CBG14652	Protein CBG14652. (299 aa)
	sorf-1	Protein CBG14197. (239 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG14652	bec-1	A8XKD6	A8XWN4	Protein CBG14652.	Protein CBR-BEC-1.	0.999
CBG14652	sorf-1	A8XKD6	A8XJH7	Protein CBG14652.	Protein CBG14197.	0.640
CBG14652	sorf-2	A8XKD6	A8WL83	Protein CBG14652.	Protein CBG24676.	0.642
CBG14652	vps-18	A8XKD6	A8XHM7	Protein CBG14652.	Protein CBG13485.	0.417
CBG14652	vps-34	A8XKD6	A8Y1J0	Protein CBG14652.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.995
bec-1	CBG14652	A8XWN4	A8XKD6	Protein CBR-BEC-1.	Protein CBG14652.	0.999
bec-1	sorf-2	A8XWN4	A8WL83	Protein CBR-BEC-1.	Protein CBG24676.	0.846
bec-1	vps-34	A8XWN4	A8Y1J0	Protein CBR-BEC-1.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.999
rab-7	vps-18	A8XYS7	A8XHM7	Protein CBR-RAB-7.	Protein CBG13485.	0.974
rab-7	vps-34	A8XYS7	A8Y1J0	Protein CBR-RAB-7.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.624
sorf-1	CBG14652	A8XJH7	A8XKD6	Protein CBG14197.	Protein CBG14652.	0.640
sorf-1	sorf-2	A8XJH7	A8WL83	Protein CBG14197.	Protein CBG24676.	0.972
sorf-1	vps-18	A8XJH7	A8XHM7	Protein CBG14197.	Protein CBG13485.	0.685
sorf-2	CBG14652	A8WL83	A8XKD6	Protein CBG24676.	Protein CBG14652.	0.642
sorf-2	bec-1	A8WL83	A8XWN4	Protein CBG24676.	Protein CBR-BEC-1.	0.846
sorf-2	sorf-1	A8WL83	A8XJH7	Protein CBG24676.	Protein CBG14197.	0.972
sorf-2	vps-18	A8WL83	A8XHM7	Protein CBG24676.	Protein CBG13485.	0.753
sorf-2	vps-34	A8WL83	A8Y1J0	Protein CBG24676.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.630
vps-18	CBG14652	A8XHM7	A8XKD6	Protein CBG13485.	Protein CBG14652.	0.417
vps-18	rab-7	A8XHM7	A8XYS7	Protein CBG13485.	Protein CBR-RAB-7.	0.974