STRINGSTRING
rnp-1 rnp-1 vha-19 vha-19 atx-2 atx-2 sig-7 sig-7 Cbr-unc-13 Cbr-unc-13 unc-13 unc-13 gld-1 gld-1 oma-2 oma-2 fem-3 fem-3 fog-3 fog-3 lin-41 lin-41
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rnp-1Protein CBR-RNP-1. (286 aa)
vha-19Protein CBR-VHA-19. (453 aa)
atx-2Protein CBR-ATX-2. (1051 aa)
sig-7Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (434 aa)
Cbr-unc-13Protein CBG11945. (394 aa)
unc-13Protein CBR-UNC-13. (2250 aa)
gld-1Protein CBR-GLD-1. (467 aa)
oma-2Protein CBR-OMA-2. (379 aa)
fem-3Sex-determination protein fem-3; Required for male development. In XO (male) animals, fem-3 directs male differentiation in all tissues. In XX (hermaphrodite animals), it specifies the first 80 or so germ cells to be sperm. Negatively regulates male development when bound to tra-2. (409 aa)
fog-3Protein CBR-FOG-3. (261 aa)
lin-41Protein CBR-LIN-41. (934 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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