(16 nodes) Positive regulation of digestive system process network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	egl-3	Protein CBR-EGL-3; Belongs to the peptidase S8 family. (662 aa)
	exp-1	Protein CBR-EXP-1; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (447 aa)
	nlp-40	Protein CBR-NLP-40. (121 aa)
	pbo-5	Protein CBR-PBO-5; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (500 aa)
	dsc-1	Protein CBR-DSC-1. (311 aa)
	aex-6	Protein CBR-AEX-6. (215 aa)
	aex-3	Protein CBR-AEX-3. (1500 aa)
	egl-21	Protein CBR-EGL-21. (473 aa)
	aex-1	Protein CBR-AEX-1. (1034 aa)
	aex-4	Protein CBR-AEX-4. (209 aa)
	syx-3	Protein CBR-SYX-3; Belongs to the syntaxin family. (305 aa)
	aex-2	Protein CBG16060. (320 aa)
	pbo-4	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (797 aa)
	aex-5	Protein CBR-AEX-5. (541 aa)
	CBG11409	Protein CBG11409. (685 aa)
	Cbr-aex-1	Protein CBG26592. (97 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cbr-aex-1	aex-2	B6IIF2	A8XN68	Protein CBG26592.	Protein CBG16060.	0.647
Cbr-aex-1	aex-3	B6IIF2	A8X5V3	Protein CBG26592.	Protein CBR-AEX-3.	0.624
Cbr-aex-1	aex-4	B6IIF2	A8XJN5	Protein CBG26592.	Protein CBR-AEX-4.	0.645
Cbr-aex-1	aex-5	B6IIF2	A8XWH5	Protein CBG26592.	Protein CBR-AEX-5.	0.649
Cbr-aex-1	nlp-40	B6IIF2	A8WVR1	Protein CBG26592.	Protein CBR-NLP-40.	0.630
Cbr-aex-1	syx-3	B6IIF2	A8XKF0	Protein CBG26592.	Protein CBR-SYX-3; Belongs to the syntaxin family.	0.632
aex-1	aex-2	A8XEN6	A8XN68	Protein CBR-AEX-1.	Protein CBG16060.	0.647
aex-1	aex-3	A8XEN6	A8X5V3	Protein CBR-AEX-1.	Protein CBR-AEX-3.	0.624
aex-1	aex-4	A8XEN6	A8XJN5	Protein CBR-AEX-1.	Protein CBR-AEX-4.	0.645
aex-1	aex-5	A8XEN6	A8XWH5	Protein CBR-AEX-1.	Protein CBR-AEX-5.	0.649
aex-1	nlp-40	A8XEN6	A8WVR1	Protein CBR-AEX-1.	Protein CBR-NLP-40.	0.630
aex-1	syx-3	A8XEN6	A8XKF0	Protein CBR-AEX-1.	Protein CBR-SYX-3; Belongs to the syntaxin family.	0.632
aex-2	Cbr-aex-1	A8XN68	B6IIF2	Protein CBG16060.	Protein CBG26592.	0.647
aex-2	aex-1	A8XN68	A8XEN6	Protein CBG16060.	Protein CBR-AEX-1.	0.647
aex-2	aex-4	A8XN68	A8XJN5	Protein CBG16060.	Protein CBR-AEX-4.	0.743
aex-2	aex-5	A8XN68	A8XWH5	Protein CBG16060.	Protein CBR-AEX-5.	0.739
aex-2	aex-6	A8XN68	A8X5M4	Protein CBG16060.	Protein CBR-AEX-6.	0.594
aex-2	exp-1	A8XN68	A8WTZ9	Protein CBG16060.	Protein CBR-EXP-1; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.502
aex-2	nlp-40	A8XN68	A8WVR1	Protein CBG16060.	Protein CBR-NLP-40.	0.915
aex-2	pbo-4	A8XN68	A8XR77	Protein CBG16060.	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.	0.634