(63 nodes) Collagen-containing extracellular matrix network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bli-1	Protein CBR-BLI-1. (993 aa)
	CBG24084	Protein CBG24084. (1073 aa)
	lam-3	Protein CBR-LAM-3. (3141 aa)
	CBG24478	Protein CBG24478. (262 aa)
	CBG24893	Protein CBG24893. (295 aa)
	cdh-3	Protein CBR-CDH-3. (3207 aa)
	rol-6	Protein CBR-ROL-6. (348 aa)
	cut-1	Protein CBR-CUT-1. (429 aa)
	lec-1	Galectin. (279 aa)
	lect-2	Protein CBG02500. (471 aa)
	pxf-1	Protein CBR-PXF-1. (1469 aa)
	gon-1	Protein CBR-GON-1. (2153 aa)
	pat-3	Integrin beta; Belongs to the integrin beta chain family. (818 aa)
	cpz-1	Protein CBR-CPZ-1; Belongs to the peptidase C1 family. (306 aa)
	CBG03805	Protein CBG03805; Belongs to the peptidase C1 family. (427 aa)
	CBG04412	Protein CBG04412. (528 aa)
	epi-1	Protein CBR-EPI-1. (3820 aa)
	dpy-13	Protein CBR-DPY-13. (302 aa)
	CBG05669	Protein CBG05669. (92 aa)
	cut-2	Protein CBR-CUT-2. (209 aa)
	CBG06719	Protein CBG06719. (104 aa)
	CBG06873	Protein CBG06873. (935 aa)
	Cbr-gpn-1	Protein CBR-GPN-1; Belongs to the glypican family. (1442 aa)
	col-19	Protein CBR-COL-19. (289 aa)
	suro-1	Protein CBR-SURO-1. (689 aa)
	nid-1	Protein CBR-NID-1. (1590 aa)
	emb-9	Protein CBR-EMB-9. (1759 aa)
	CBG10938	Protein CBG10938. (579 aa)
	lam-2	Protein CBR-LAM-2. (1646 aa)
	unc-6	Protein CBR-UNC-6. (621 aa)
	unc-52	Protein CBR-UNC-52. (2481 aa)
	CBG11065	Protein CBG11065. (823 aa)
	dpy-5	Protein CBR-DPY-5. (284 aa)
	spon-1	Protein CBR-SPON-1. (854 aa)
	lon-2	Protein CBR-LON-2. (509 aa)
	CBG15211	Protein CBG15211. (480 aa)
	him-4	Protein CBR-HIM-4. (2899 aa)
	CBG16014	Protein CBG16014. (2753 aa)
	dpy-7	Protein CBR-DPY-7. (319 aa)
	pxn-2	Protein CBR-PXN-2. (1366 aa)
	skpo-2	Protein CBG17768. (735 aa)
	CBG18276	Protein CBG18276. (442 aa)
	cut-6	Protein CBR-CUT-6. (357 aa)
	CBG17988	Protein CBG17988. (1188 aa)
	hse-5	Protein CBR-HSE-5. (618 aa)
	lam-1	Protein CBR-LAM-1. (1183 aa)
	fbl-1	Protein CBR-FBL-1. (925 aa)
	CBG20114	Protein CBG20114. (554 aa)
	mig-6	Protein CBR-MIG-6. (2157 aa)
	elks-1	Protein CBR-ELKS-1. (743 aa)
	CBG21068	Protein CBG21068. (462 aa)
	mig-18	Protein CBG21220. (228 aa)
	CBG21291	Protein CBG21291. (430 aa)
	tln-1	Protein CBG22153. (1036 aa)
	ost-1	Protein CBR-OST-1. (264 aa)
	sqt-3	Protein CBR-SQT-3. (301 aa)
	lon-3	Protein CBR-LON-3. (324 aa)
	smoc-1	Protein CBG23276. (261 aa)
	col-158	Protein CBR-COL-158. (336 aa)
	mig-17	Protein CBR-MIG-17. (533 aa)
	col-153	Protein CBR-COL-153. (343 aa)
	CBG25184	Protein CBG25184. (1573 aa)
	cle-1	Protein CBR-CLE-1, isoform b. (1292 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG04412	CBG24478	A8WXH1	A8WKT0	Protein CBG04412.	Protein CBG24478.	0.420
CBG06719	cut-1	A8X2Y0	A8WT62	Protein CBG06719.	Protein CBR-CUT-1.	0.626
CBG06873	spon-1	A8X395	A8XH06	Protein CBG06873.	Protein CBR-SPON-1.	0.423
CBG11065	cle-1	A8XCB7	H8WGV5	Protein CBG11065.	Protein CBR-CLE-1, isoform b.	0.402
CBG11065	nid-1	A8XCB7	A8X8Y5	Protein CBG11065.	Protein CBR-NID-1.	0.577
CBG20114	epi-1	A8XX44	A8WXI2	Protein CBG20114.	Protein CBR-EPI-1.	0.959
CBG20114	lam-1	A8XX44	A8XWW8	Protein CBG20114.	Protein CBR-LAM-1.	0.965
CBG20114	lam-2	A8XX44	A8XBZ6	Protein CBG20114.	Protein CBR-LAM-2.	0.761
CBG20114	lam-3	A8XX44	A8WKH5	Protein CBG20114.	Protein CBR-LAM-3.	0.959
CBG20114	nid-1	A8XX44	A8X8Y5	Protein CBG20114.	Protein CBR-NID-1.	0.462
CBG20114	pat-3	A8XX44	A8WVF5	Protein CBG20114.	Integrin beta; Belongs to the integrin beta chain family.	0.927
CBG24478	CBG04412	A8WKT0	A8WXH1	Protein CBG24478.	Protein CBG04412.	0.420
CBG25184	pat-3	B6IM09	A8WVF5	Protein CBG25184.	Integrin beta; Belongs to the integrin beta chain family.	0.985
CBG25184	tln-1	B6IM09	A8Y1N6	Protein CBG25184.	Protein CBG22153.	0.939
bli-1	sqt-3	A8WSY9	A8Y3V1	Protein CBR-BLI-1.	Protein CBR-SQT-3.	0.533
cdh-3	him-4	A8WM68	A8XN78	Protein CBR-CDH-3.	Protein CBR-HIM-4.	0.667
cle-1	CBG11065	H8WGV5	A8XCB7	Protein CBR-CLE-1, isoform b.	Protein CBG11065.	0.402
cle-1	epi-1	H8WGV5	A8WXI2	Protein CBR-CLE-1, isoform b.	Protein CBR-EPI-1.	0.645
cle-1	fbl-1	H8WGV5	A8XWY9	Protein CBR-CLE-1, isoform b.	Protein CBR-FBL-1.	0.662
cle-1	hse-5	H8WGV5	A8XT03	Protein CBR-CLE-1, isoform b.	Protein CBR-HSE-5.	0.740