(8 nodes) SWI/SNF complex network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	swsn-1	Protein CBR-SWSN-1. (799 aa)
	snfc-5	Protein CBR-SNFC-5. (313 aa)
	swsn-3	Protein CBR-SWSN-3. (252 aa)
	CBG09817	Protein CBG09817. (283 aa)
	ham-3	Protein CBR-SWSN-2.1. (458 aa)
	swsn-2.2	Protein CBR-SWSN-2.2. (652 aa)
	swsn-6	Protein CBR-SWSN-6; Belongs to the actin family. (436 aa)
	let-526	Protein CBR-LET-526. (1905 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ham-3	let-526	A8X9V3	A8XFL2	Protein CBR-SWSN-2.1.	Protein CBR-LET-526.	0.932
ham-3	snfc-5	A8X9V3	A8XSZ3	Protein CBR-SWSN-2.1.	Protein CBR-SNFC-5.	0.991
ham-3	swsn-1	A8X9V3	A8XGN4	Protein CBR-SWSN-2.1.	Protein CBR-SWSN-1.	0.993
ham-3	swsn-2.2	A8X9V3	A8XF24	Protein CBR-SWSN-2.1.	Protein CBR-SWSN-2.2.	0.718
ham-3	swsn-3	A8X9V3	A8X9Q0	Protein CBR-SWSN-2.1.	Protein CBR-SWSN-3.	0.984
ham-3	swsn-6	A8X9V3	A8XWS8	Protein CBR-SWSN-2.1.	Protein CBR-SWSN-6; Belongs to the actin family.	0.983
let-526	ham-3	A8XFL2	A8X9V3	Protein CBR-LET-526.	Protein CBR-SWSN-2.1.	0.932
let-526	snfc-5	A8XFL2	A8XSZ3	Protein CBR-LET-526.	Protein CBR-SNFC-5.	0.991
let-526	swsn-1	A8XFL2	A8XGN4	Protein CBR-LET-526.	Protein CBR-SWSN-1.	0.993
let-526	swsn-2.2	A8XFL2	A8XF24	Protein CBR-LET-526.	Protein CBR-SWSN-2.2.	0.951
let-526	swsn-3	A8XFL2	A8X9Q0	Protein CBR-LET-526.	Protein CBR-SWSN-3.	0.973
let-526	swsn-6	A8XFL2	A8XWS8	Protein CBR-LET-526.	Protein CBR-SWSN-6; Belongs to the actin family.	0.953
snfc-5	ham-3	A8XSZ3	A8X9V3	Protein CBR-SNFC-5.	Protein CBR-SWSN-2.1.	0.991
snfc-5	let-526	A8XSZ3	A8XFL2	Protein CBR-SNFC-5.	Protein CBR-LET-526.	0.991
snfc-5	swsn-1	A8XSZ3	A8XGN4	Protein CBR-SNFC-5.	Protein CBR-SWSN-1.	0.999
snfc-5	swsn-2.2	A8XSZ3	A8XF24	Protein CBR-SNFC-5.	Protein CBR-SWSN-2.2.	0.991
snfc-5	swsn-3	A8XSZ3	A8X9Q0	Protein CBR-SNFC-5.	Protein CBR-SWSN-3.	0.996
snfc-5	swsn-6	A8XSZ3	A8XWS8	Protein CBR-SNFC-5.	Protein CBR-SWSN-6; Belongs to the actin family.	0.996
swsn-1	ham-3	A8XGN4	A8X9V3	Protein CBR-SWSN-1.	Protein CBR-SWSN-2.1.	0.993
swsn-1	let-526	A8XGN4	A8XFL2	Protein CBR-SWSN-1.	Protein CBR-LET-526.	0.993