(37 nodes) Host cellular component network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG25357	Protein CBG25357. (2025 aa)
	CBG26278	Protein CBG26278. (924 aa)
	CBG26108	Protein CBG26108. (215 aa)
	CBG27949	Protein CBG27949. (462 aa)
	CBG27950	Protein CBG27950. (706 aa)
	CBG27554	Protein CBG27554. (348 aa)
	CBG26155	Protein CBG26155. (166 aa)
	CBG26156	Protein CBG26156. (392 aa)
	CBG26159	Protein CBG26159. (1333 aa)
	CBG28002	Protein CBG28002. (953 aa)
	CBG28064	Protein CBG28064. (1424 aa)
	CBG25708	Protein CBG25708. (2435 aa)
	CBG26948	Protein CBG26948. (352 aa)
	CBG26950	Protein CBG26950. (811 aa)
	CBG26959	Protein CBG26959. (1114 aa)
	CBG03736	Protein CBG03736. (119 aa)
	CBG25525	Protein CBG25525. (1231 aa)
	CBG25524	Protein CBG25524. (129 aa)
	CBG26128	Protein CBG26128. (1984 aa)
	CBG25560	Protein CBG25560. (343 aa)
	CBG26654	Protein CBG26654. (561 aa)
	CBG15627	Protein CBG15627. (1710 aa)
	CBG20823	Protein CBG20823. (231 aa)
	CBG17479	Protein CBG17479. (301 aa)
	CBG14715	Protein CBG14715. (196 aa)
	CBG14168	Protein CBG14168. (2559 aa)
	CBG13399	Protein CBG13399. (455 aa)
	CBG12711	Protein CBG12711. (249 aa)
	CBG08539	Protein CBG08539. (881 aa)
	CBG06517	Protein CBG06517. (390 aa)
	CBG00216	Protein CBG00216. (587 aa)
	CBG24066	Protein CBG24066. (132 aa)
	CBG28125	Protein CBG28125. (414 aa)
	CBG26797	Protein CBG26797. (249 aa)
	CBG27784	Protein CBG27784. (524 aa)
	CBG27785	Protein CBG27785. (291 aa)
	CBG26808	Protein CBG26808. (150 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG17479	CBG26155	A8XR37	B6IKV8	Protein CBG17479.	Protein CBG26155.	0.522
CBG17479	CBG26159	A8XR37	B6IKW2	Protein CBG17479.	Protein CBG26159.	0.496
CBG17479	CBG26959	A8XR37	B6IHV2	Protein CBG17479.	Protein CBG26959.	0.515
CBG17479	CBG27554	A8XR37	B6IKL8	Protein CBG17479.	Protein CBG27554.	0.490
CBG17479	CBG27950	A8XR37	B6IJP2	Protein CBG17479.	Protein CBG27950.	0.534
CBG17479	CBG28002	A8XR37	B6IM63	Protein CBG17479.	Protein CBG28002.	0.511
CBG25357	CBG26128	B6IIM1	B6IFH5	Protein CBG25357.	Protein CBG26128.	0.402
CBG25357	CBG26159	B6IIM1	B6IKW2	Protein CBG25357.	Protein CBG26159.	0.410
CBG25357	CBG28064	B6IIM1	B6IGQ4	Protein CBG25357.	Protein CBG28064.	0.466
CBG25525	CBG26950	B6IFQ0	B6IHU3	Protein CBG25525.	Protein CBG26950.	0.518
CBG25708	CBG26128	B6IGX1	B6IFH5	Protein CBG25708.	Protein CBG26128.	0.475
CBG26128	CBG25357	B6IFH5	B6IIM1	Protein CBG26128.	Protein CBG25357.	0.402
CBG26128	CBG25708	B6IFH5	B6IGX1	Protein CBG26128.	Protein CBG25708.	0.475
CBG26128	CBG26159	B6IFH5	B6IKW2	Protein CBG26128.	Protein CBG26159.	0.483
CBG26128	CBG26278	B6IFH5	B6IJI3	Protein CBG26128.	Protein CBG26278.	0.474
CBG26128	CBG28064	B6IFH5	B6IGQ4	Protein CBG26128.	Protein CBG28064.	0.476
CBG26155	CBG17479	B6IKV8	A8XR37	Protein CBG26155.	Protein CBG17479.	0.522
CBG26155	CBG26156	B6IKV8	B6IKV9	Protein CBG26155.	Protein CBG26156.	0.539
CBG26155	CBG26654	B6IKV8	B6IE15	Protein CBG26155.	Protein CBG26654.	0.525
CBG26155	CBG27554	B6IKV8	B6IKL8	Protein CBG26155.	Protein CBG27554.	0.507