(19 nodes) Cytosolic small ribosomal subunit network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps-25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (117 aa)
	rps-3	Protein CBR-RPS-3; Belongs to the universal ribosomal protein uS3 family. (247 aa)
	eif-2a	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (571 aa)
	rps-23	Protein CBR-RPS-23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	rps-5	Protein CBR-RPS-5; Belongs to the universal ribosomal protein uS7 family. (210 aa)
	rps-27	Protein CBR-RPS-27. (83 aa)
	rps-14	Protein CBR-RPS-14; Belongs to the universal ribosomal protein uS11 family. (152 aa)
	rps-20	Protein CBR-RPS-20. (117 aa)
	rps-12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (153 aa)
	rps-16	Protein CBR-RPS-16; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	rps-15	Protein CBR-RPS-15; Belongs to the universal ribosomal protein uS19 family. (151 aa)
	rps-17	Protein CBR-RPS-17. (130 aa)
	rps-24	Protein CBR-RPS-24. (131 aa)
	rps-28	Protein CBR-RPS-28. (65 aa)
	rps-2	Protein CBR-RPS-2. (85 aa)
	rps-13	Protein CBR-RPS-13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	rps-26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (117 aa)
	rps-7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	rps-10	Protein CBR-RPS-10. (149 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
eif-2a	rps-10	A8WSS1	A8Y1Y5	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-10.	0.596
eif-2a	rps-12	A8WSS1	A8X825	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.581
eif-2a	rps-13	A8WSS1	A8XW72	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-13; Belongs to the universal ribosomal protein uS15 family.	0.633
eif-2a	rps-14	A8WSS1	A8X6D1	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-14; Belongs to the universal ribosomal protein uS11 family.	0.587
eif-2a	rps-15	A8WSS1	A8XFA3	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-15; Belongs to the universal ribosomal protein uS19 family.	0.644
eif-2a	rps-16	A8WSS1	A8XDK5	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-16; Belongs to the universal ribosomal protein uS9 family.	0.594
eif-2a	rps-2	A8WSS1	A8XRG9	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-2.	0.575
eif-2a	rps-20	A8WSS1	A8X7B4	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-20.	0.585
eif-2a	rps-23	A8WSS1	A8WUS4	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-23; Belongs to the universal ribosomal protein uS12 family.	0.567
eif-2a	rps-25	A8WSS1	A8X922	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.540
eif-2a	rps-26	A8WSS1	A8XWD3	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.540
eif-2a	rps-27	A8WSS1	A8X285	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-27.	0.583
eif-2a	rps-28	A8WSS1	A8XI84	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-28.	0.540
eif-2a	rps-3	A8WSS1	A8WKC0	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-3; Belongs to the universal ribosomal protein uS3 family.	0.595
eif-2a	rps-5	A8WSS1	A8X141	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	Protein CBR-RPS-5; Belongs to the universal ribosomal protein uS7 family.	0.553
eif-2a	rps-7	A8WSS1	A8XZW1	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.589
rps-10	eif-2a	A8Y1Y5	A8WSS1	Protein CBR-RPS-10.	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.	0.596
rps-10	rps-12	A8Y1Y5	A8X825	Protein CBR-RPS-10.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
rps-10	rps-13	A8Y1Y5	A8XW72	Protein CBR-RPS-10.	Protein CBR-RPS-13; Belongs to the universal ribosomal protein uS15 family.	0.999
rps-10	rps-14	A8Y1Y5	A8X6D1	Protein CBR-RPS-10.	Protein CBR-RPS-14; Belongs to the universal ribosomal protein uS11 family.	0.999