(33 nodes) Carboxy-terminal domain protein kinase complex network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG27553	Protein CBG27553. (89 aa)
	CBG26441	Protein CBG26441. (111 aa)
	cit-1.2	Protein CBR-CIT-1.2. (792 aa)
	cit-1.1	Protein CBR-CIT-1.1. (161 aa)
	CBG22965	Protein CBG22965. (281 aa)
	mnat-1	Protein CBR-MNAT-1. (343 aa)
	cdk-9	Protein CBR-CDK-9; Belongs to the protein kinase superfamily. (464 aa)
	cdk-12	Protein CBR-CDTL-7. (642 aa)
	cyh-1	Protein CBR-CYH-1. (320 aa)
	ccnk-1	Protein CBG04574; Belongs to the cyclin family. (260 aa)
	cdk-7	Protein CBR-CDK-7; Belongs to the protein kinase superfamily. (343 aa)
	gtf-2h1	Protein CBG01668. (526 aa)
	kin-15	Protein CBR-KIN-15; Belongs to the protein kinase superfamily. Tyr protein kinase family. (506 aa)
	kin-16	Protein CBR-KIN-16; Belongs to the protein kinase superfamily. Tyr protein kinase family. (501 aa)
	CBG13719	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (482 aa)
	CBG14241	Protein CBG14241. (261 aa)
	gtf-2h5	Protein CBG15257. (72 aa)
	CBG04848	Protein CBG04848. (366 aa)
	CBG15591	Protein CBG15591. (344 aa)
	ver-3	Protein CBR-VER-3. (1313 aa)
	CBG17535	Receptor protein-tyrosine kinase. (1447 aa)
	CBG17534	Protein CBG17534. (573 aa)
	CBG16094	Protein CBG16094. (251 aa)
	CBG15501	Protein CBG15501. (583 aa)
	CBG15589	Protein CBG15589. (512 aa)
	CBG04908	Protein CBG04908. (372 aa)
	CBG04913	Protein CBG04913. (401 aa)
	gtf-2h3	Protein CBG09872. (297 aa)
	xpb-1	Protein CBG13269. (800 aa)
	gtf-2h2c	General transcription factor IIH subunit. (376 aa)
	CBG04906	Protein CBG04906; Belongs to the protein kinase superfamily. Tyr protein kinase family. (458 aa)
	CBG04907	Protein CBG04907. (385 aa)
	CBG25972	Protein CBG25972. (66 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG13719	CBG16094	A8XIJ6	A8XN46	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG16094.	0.961
CBG13719	CBG26441	A8XIJ6	B6IEX8	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG26441.	0.985
CBG13719	ccnk-1	A8XIJ6	A8WXY8	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG04574; Belongs to the cyclin family.	0.857
CBG13719	cdk-12	A8XIJ6	A8XT06	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-CDTL-7.	0.835
CBG13719	cdk-7	A8XIJ6	A8WWZ3	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-CDK-7; Belongs to the protein kinase superfamily.	0.975
CBG13719	cit-1.1	A8XIJ6	A8Y3K1	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-CIT-1.1.	0.734
CBG13719	cit-1.2	A8XIJ6	A8Y3K2	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-CIT-1.2.	0.734
CBG13719	cyh-1	A8XIJ6	A8XRR3	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-CYH-1.	0.990
CBG13719	gtf-2h1	A8XIJ6	A8WR44	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG01668.	0.985
CBG13719	gtf-2h2c	A8XIJ6	A8X9W6	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	General transcription factor IIH subunit.	0.999
CBG13719	gtf-2h3	A8XIJ6	A8X9V2	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG09872.	0.999
CBG13719	gtf-2h5	A8XIJ6	A8XLJ7	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG15257.	0.999
CBG13719	mnat-1	A8XIJ6	A8XXU1	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBR-MNAT-1.	0.998
CBG13719	xpb-1	A8XIJ6	A8XHG0	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Protein CBG13269.	0.999
CBG15501	CBG15589	A8XM70	A8XM32	Protein CBG15501.	Protein CBG15589.	0.701
CBG15501	CBG15591	A8XM70	A8XM31	Protein CBG15501.	Protein CBG15591.	0.768
CBG15501	CBG16094	A8XM70	A8XN46	Protein CBG15501.	Protein CBG16094.	0.504
CBG15501	CBG25972	A8XM70	B6IKS2	Protein CBG15501.	Protein CBG25972.	0.701
CBG15501	ccnk-1	A8XM70	A8WXY8	Protein CBG15501.	Protein CBG04574; Belongs to the cyclin family.	0.534
CBG15501	cdk-12	A8XM70	A8XT06	Protein CBG15501.	Protein CBR-CDTL-7.	0.787