(7 nodes) Exon-exon junction complex network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG09807	Protein CBG09807. (161 aa)
	rnp-4	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (142 aa)
	CBG20393	Protein CBG20393. (622 aa)
	mag-1	Protein CBR-MAG-1. (153 aa)
	CBG01923	Protein CBG01923. (2041 aa)
	smg-5	Protein CBR-SMG-5. (551 aa)
	smg-3	Protein CBR-SMG-3. (1141 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG09807	CBG20393	A8X9P3	A8XXP0	Protein CBG09807.	Protein CBG20393.	0.635
CBG09807	mag-1	A8X9P3	A8XTW6	Protein CBG09807.	Protein CBR-MAG-1.	0.991
CBG09807	rnp-4	A8X9P3	A8XSZ2	Protein CBG09807.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.998
CBG09807	smg-3	A8X9P3	A8WZX8	Protein CBG09807.	Protein CBR-SMG-3.	0.730
CBG20393	CBG09807	A8XXP0	A8X9P3	Protein CBG20393.	Protein CBG09807.	0.635
CBG20393	mag-1	A8XXP0	A8XTW6	Protein CBG20393.	Protein CBR-MAG-1.	0.989
CBG20393	rnp-4	A8XXP0	A8XSZ2	Protein CBG20393.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.997
CBG20393	smg-3	A8XXP0	A8WZX8	Protein CBG20393.	Protein CBR-SMG-3.	0.934
CBG20393	smg-5	A8XXP0	A8WW29	Protein CBG20393.	Protein CBR-SMG-5.	0.572
mag-1	CBG09807	A8XTW6	A8X9P3	Protein CBR-MAG-1.	Protein CBG09807.	0.991
mag-1	CBG20393	A8XTW6	A8XXP0	Protein CBR-MAG-1.	Protein CBG20393.	0.989
mag-1	rnp-4	A8XTW6	A8XSZ2	Protein CBR-MAG-1.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999
mag-1	smg-3	A8XTW6	A8WZX8	Protein CBR-MAG-1.	Protein CBR-SMG-3.	0.945
mag-1	smg-5	A8XTW6	A8WW29	Protein CBR-MAG-1.	Protein CBR-SMG-5.	0.632
rnp-4	CBG09807	A8XSZ2	A8X9P3	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Protein CBG09807.	0.998
rnp-4	CBG20393	A8XSZ2	A8XXP0	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Protein CBG20393.	0.997
rnp-4	mag-1	A8XSZ2	A8XTW6	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Protein CBR-MAG-1.	0.999
rnp-4	smg-3	A8XSZ2	A8WZX8	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Protein CBR-SMG-3.	0.996
rnp-4	smg-5	A8XSZ2	A8WW29	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Protein CBR-SMG-5.	0.731
smg-3	CBG09807	A8WZX8	A8X9P3	Protein CBR-SMG-3.	Protein CBG09807.	0.730