(27 nodes) Recycling endosome network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ilys-5	Protein CBR-ILYS-5. (139 aa)
	rap-2	Protein CBR-RAP-2. (181 aa)
	rme-8	Protein CBR-RME-8, isoform a. (2341 aa)
	CBG23562	Protein CBG23562. (185 aa)
	CBG27597	Protein CBG27597. (84 aa)
	scm-1	Secretory carrier-associated membrane protein. (332 aa)
	crp-1	Protein CBR-CRP-1. (187 aa)
	cnt-1	Protein CBR-CNT-1. (824 aa)
	amph-1	Protein CBR-AMPH-1. (482 aa)
	CBG19958	Protein CBG19958. (572 aa)
	CBG19677	Protein CBG19677. (491 aa)
	rme-1	Protein CBR-RME-1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (611 aa)
	CBG18559	Protein CBG18559. (214 aa)
	vps-50	Protein CBG18297. (930 aa)
	sdpn-1	Protein CBR-SDPN-1. (485 aa)
	rab-37	Protein CBR-RAB-37. (238 aa)
	mrp-6	Protein CBR-MRP-6. (1332 aa)
	CBG13932	Protein CBG13932. (534 aa)
	rab-35	Protein CBR-RAB-35. (175 aa)
	hmt-1	Protein CBR-HMT-1. (700 aa)
	cdc-42	Protein CBR-CDC-42. (191 aa)
	tat-1	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1218 aa)
	arf-6	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	rfip-1	Protein CBG02531. (445 aa)
	drn-1	Protein CBR-DRN-1. (310 aa)
	vps-51	Protein CBR-VPS-51. (695 aa)
	snap-29	Protein CBR-SNAP-29. (277 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG18559	arf-6	A8XTK7	A8WMU9	Protein CBG18559.	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	0.423
CBG18559	cnt-1	A8XTK7	A8XZ59	Protein CBG18559.	Protein CBR-CNT-1.	0.635
CBG18559	rfip-1	A8XTK7	A8WU37	Protein CBG18559.	Protein CBG02531.	0.906
CBG19958	vps-50	A8XWT5	A8XSD2	Protein CBG19958.	Protein CBG18297.	0.633
CBG19958	vps-51	A8XWT5	A8WW46	Protein CBG19958.	Protein CBR-VPS-51.	0.545
CBG23562	arf-6	H8WH16	A8WMU9	Protein CBG23562.	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	0.423
CBG23562	cnt-1	H8WH16	A8XZ59	Protein CBG23562.	Protein CBR-CNT-1.	0.635
CBG23562	rab-35	H8WH16	A8XHA6	Protein CBG23562.	Protein CBR-RAB-35.	0.402
CBG23562	rfip-1	H8WH16	A8WU37	Protein CBG23562.	Protein CBG02531.	0.906
amph-1	arf-6	A8XX10	A8WMU9	Protein CBR-AMPH-1.	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	0.698
amph-1	cdc-42	A8XX10	A8XGW3	Protein CBR-AMPH-1.	Protein CBR-CDC-42.	0.691
amph-1	rme-1	A8XX10	A8XUA4	Protein CBR-AMPH-1.	Protein CBR-RME-1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.861
amph-1	sdpn-1	A8XX10	A8XPZ1	Protein CBR-AMPH-1.	Protein CBR-SDPN-1.	0.703
arf-6	CBG18559	A8WMU9	A8XTK7	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	Protein CBG18559.	0.423
arf-6	CBG23562	A8WMU9	H8WH16	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	Protein CBG23562.	0.423
arf-6	amph-1	A8WMU9	A8XX10	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	Protein CBR-AMPH-1.	0.698
arf-6	cdc-42	A8WMU9	A8XGW3	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	Protein CBR-CDC-42.	0.750
arf-6	cnt-1	A8WMU9	A8XZ59	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	Protein CBR-CNT-1.	0.610
arf-6	rab-35	A8WMU9	A8XHA6	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	Protein CBR-RAB-35.	0.893
arf-6	rfip-1	A8WMU9	A8WU37	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	Protein CBG02531.	0.701