STRINGSTRING
arf-6 arf-6 rfip-1 rfip-1 drn-1 drn-1 rap-2 rap-2 rab-35 rab-35 mrp-6 mrp-6 sdpn-1 sdpn-1 rme-1 rme-1 cnt-1 cnt-1 scm-1 scm-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
arf-6Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family. (175 aa)
rfip-1Protein CBG02531. (445 aa)
drn-1Protein CBR-DRN-1. (310 aa)
rap-2Protein CBR-RAP-2. (181 aa)
rab-35Protein CBR-RAB-35. (175 aa)
mrp-6Protein CBR-MRP-6. (1332 aa)
sdpn-1Protein CBR-SDPN-1. (485 aa)
rme-1Protein CBR-RME-1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (611 aa)
cnt-1Protein CBR-CNT-1. (824 aa)
scm-1Secretory carrier-associated membrane protein. (332 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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