(19 nodes) SNF2, N-terminal network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ssl-1	Protein CBR-SSL-1. (1964 aa)
	CBG00336	Protein CBG00336. (1062 aa)
	btf-1	Protein CBR-BTF-1. (1653 aa)
	CBG03965	Protein CBG03965. (1109 aa)
	CBG06016	Protein CBG06016. (1380 aa)
	CBG05712	Protein CBG05712. (1659 aa)
	swsn-4	Protein CBG08287. (1512 aa)
	smrc-1	Protein CBG09114. (449 aa)
	let-418	Protein CBR-LET-418. (1863 aa)
	chd-1	Protein CBR-CHD-1. (1465 aa)
	rad-54	Protein CBR-RAD-54. (1079 aa)
	CBG13225	Protein CBG13225. (1082 aa)
	CBG14390	Protein CBG14390. (2938 aa)
	csb-1	Protein CBR-CSB-1. (1015 aa)
	isw-1	Protein CBR-ISW-1. (1019 aa)
	CBG18388	Protein CBG18388. (995 aa)
	rad-26	Protein CBR-RAD-26. (1340 aa)
	xnp-1	Protein CBR-XNP-1. (1333 aa)
	chd-7	Protein CBR-TAG-192. (2927 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00336	CBG18388	A8WMV0	A8XSL2	Protein CBG00336.	Protein CBG18388.	0.449
CBG00336	isw-1	A8WMV0	A8XPI3	Protein CBG00336.	Protein CBR-ISW-1.	0.485
CBG00336	smrc-1	A8WMV0	A8X7R8	Protein CBG00336.	Protein CBG09114.	0.610
CBG00336	xnp-1	A8WMV0	A8Y201	Protein CBG00336.	Protein CBR-XNP-1.	0.438
CBG03965	smrc-1	A8WVV3	A8X7R8	Protein CBG03965.	Protein CBG09114.	0.630
CBG06016	CBG14390	A8X136	A8XJW5	Protein CBG06016.	Protein CBG14390.	0.598
CBG06016	btf-1	A8X136	A8WTG0	Protein CBG06016.	Protein CBR-BTF-1.	0.443
CBG06016	isw-1	A8X136	A8XPI3	Protein CBG06016.	Protein CBR-ISW-1.	0.674
CBG06016	let-418	A8X136	A8X9E2	Protein CBG06016.	Protein CBR-LET-418.	0.433
CBG06016	rad-54	A8X136	A8XFF6	Protein CBG06016.	Protein CBR-RAD-54.	0.466
CBG13225	smrc-1	A8XHC2	A8X7R8	Protein CBG13225.	Protein CBG09114.	0.604
CBG14390	CBG06016	A8XJW5	A8X136	Protein CBG14390.	Protein CBG06016.	0.598
CBG14390	swsn-4	A8XJW5	A8X678	Protein CBG14390.	Protein CBG08287.	0.891
CBG18388	CBG00336	A8XSL2	A8WMV0	Protein CBG18388.	Protein CBG00336.	0.449
CBG18388	isw-1	A8XSL2	A8XPI3	Protein CBG18388.	Protein CBR-ISW-1.	0.487
CBG18388	rad-54	A8XSL2	A8XFF6	Protein CBG18388.	Protein CBR-RAD-54.	0.408
CBG18388	xnp-1	A8XSL2	A8Y201	Protein CBG18388.	Protein CBR-XNP-1.	0.426
btf-1	CBG06016	A8WTG0	A8X136	Protein CBR-BTF-1.	Protein CBG06016.	0.443
btf-1	chd-1	A8WTG0	A8XBT1	Protein CBR-BTF-1.	Protein CBR-CHD-1.	0.412
btf-1	chd-7	A8WTG0	A8Y205	Protein CBR-BTF-1.	Protein CBR-TAG-192.	0.419