(10 nodes) ELM2 domain network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG25853	Protein CBG25853. (127 aa)
	CBG23860	Protein CBG23860. (510 aa)
	saeg-1	Protein CBR-SAEG-1. (937 aa)
	egl-27	Protein CBR-EGL-27. (1151 aa)
	spr-1	Protein CBR-SPR-1. (887 aa)
	rcor-1	Protein CBG11880. (641 aa)
	CBG13072	Protein CBG13072. (333 aa)
	CBG18733	Protein CBG18733. (435 aa)
	CBG21614	Protein CBG21614. (754 aa)
	lin-40	Protein CBR-LIN-40. (1002 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG18733	CBG25853	A8XU04	B6IIT0	Protein CBG18733.	Protein CBG25853.	0.420
CBG18733	lin-40	A8XU04	A8X2T1	Protein CBG18733.	Protein CBR-LIN-40.	0.420
CBG25853	CBG18733	B6IIT0	A8XU04	Protein CBG25853.	Protein CBG18733.	0.420
CBG25853	lin-40	B6IIT0	A8X2T1	Protein CBG25853.	Protein CBR-LIN-40.	0.544
CBG25853	rcor-1	B6IIT0	A8XE79	Protein CBG25853.	Protein CBG11880.	0.456
CBG25853	spr-1	B6IIT0	A8XD83	Protein CBG25853.	Protein CBR-SPR-1.	0.456
egl-27	lin-40	A8XCL3	A8X2T1	Protein CBR-EGL-27.	Protein CBR-LIN-40.	0.554
lin-40	CBG18733	A8X2T1	A8XU04	Protein CBR-LIN-40.	Protein CBG18733.	0.420
lin-40	CBG25853	A8X2T1	B6IIT0	Protein CBR-LIN-40.	Protein CBG25853.	0.544
lin-40	egl-27	A8X2T1	A8XCL3	Protein CBR-LIN-40.	Protein CBR-EGL-27.	0.554
lin-40	rcor-1	A8X2T1	A8XE79	Protein CBR-LIN-40.	Protein CBG11880.	0.456
lin-40	spr-1	A8X2T1	A8XD83	Protein CBR-LIN-40.	Protein CBR-SPR-1.	0.456
rcor-1	CBG25853	A8XE79	B6IIT0	Protein CBG11880.	Protein CBG25853.	0.456
rcor-1	lin-40	A8XE79	A8X2T1	Protein CBG11880.	Protein CBR-LIN-40.	0.456
spr-1	CBG25853	A8XD83	B6IIT0	Protein CBR-SPR-1.	Protein CBG25853.	0.456
spr-1	lin-40	A8XD83	A8X2T1	Protein CBR-SPR-1.	Protein CBR-LIN-40.	0.456