(33 nodes) Chromo/chromo shadow domain network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG13888	Protein CBG13888. (122 aa)
	cec-3	Protein CBR-CEC-3. (339 aa)
	hpl-1	Protein CBG05267. (216 aa)
	CBG05277	Protein CBG05277. (924 aa)
	cec-5	Protein CBR-CEC-5. (398 aa)
	cec-4	Protein CBR-CEC-4. (311 aa)
	let-418	Protein CBR-LET-418. (1863 aa)
	set-31	Protein CBR-SET-31. (488 aa)
	CBG10226	Protein CBG10226. (806 aa)
	chd-1	Protein CBR-CHD-1. (1465 aa)
	CBG12076	Protein CBG12076. (496 aa)
	cec-8	Protein CBR-CEC-8. (631 aa)
	CBG01867	Protein CBG01867. (438 aa)
	CBG15983	Protein CBG15983. (811 aa)
	CBG15981	Protein CBG15981. (508 aa)
	hpl-2	Protein CBR-HPL-2. (305 aa)
	cec-1	Protein CBR-CEC-1. (321 aa)
	mys-1	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (473 aa)
	CBG19524	Protein CBG19524. (469 aa)
	CBG19528	Protein CBG19528. (108 aa)
	cec-6	Protein CBG19921. (1702 aa)
	CBG20449	Protein CBG20449. (180 aa)
	chd-7	Protein CBR-TAG-192. (2927 aa)
	cec-7	Protein CBG23260. (528 aa)
	CBG26659	Protein CBG26659. (341 aa)
	CBG25712	Protein CBG25712. (276 aa)
	ulp-5	Protein CBG25370. (484 aa)
	CBG27432	Protein CBG27432. (165 aa)
	CBG26613	Protein CBG26613. (336 aa)
	CBG07229	Protein CBG07229. (411 aa)
	CBG18730	Protein CBG18730. (1378 aa)
	CBG24106	Protein CBG24106. (179 aa)
	CBG24082	Protein CBG24082. (278 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG01867	let-418	A8WRG6	A8X9E2	Protein CBG01867.	Protein CBR-LET-418.	0.519
CBG07229	let-418	G2J6L2	A8X9E2	Protein CBG07229.	Protein CBR-LET-418.	0.446
CBG10226	let-418	A8XAT4	A8X9E2	Protein CBG10226.	Protein CBR-LET-418.	0.604
CBG13888	cec-1	A8XJ41	A8XT38	Protein CBG13888.	Protein CBR-CEC-1.	0.477
CBG24082	let-418	A8WJY1	A8X9E2	Protein CBG24082.	Protein CBR-LET-418.	0.519
cec-1	CBG13888	A8XT38	A8XJ41	Protein CBR-CEC-1.	Protein CBG13888.	0.477
cec-3	cec-4	A8WSC1	A8X1C5	Protein CBR-CEC-3.	Protein CBR-CEC-4.	0.669
cec-3	cec-6	A8WSC1	A8XWR1	Protein CBR-CEC-3.	Protein CBG19921.	0.744
cec-3	hpl-2	A8WSC1	A8XSE7	Protein CBR-CEC-3.	Protein CBR-HPL-2.	0.632
cec-3	let-418	A8WSC1	A8X9E2	Protein CBR-CEC-3.	Protein CBR-LET-418.	0.604
cec-4	cec-3	A8X1C5	A8WSC1	Protein CBR-CEC-4.	Protein CBR-CEC-3.	0.669
cec-4	hpl-2	A8X1C5	A8XSE7	Protein CBR-CEC-4.	Protein CBR-HPL-2.	0.739
cec-4	let-418	A8X1C5	A8X9E2	Protein CBR-CEC-4.	Protein CBR-LET-418.	0.523
cec-5	cec-6	A8X1C3	A8XWR1	Protein CBR-CEC-5.	Protein CBG19921.	0.708
cec-5	hpl-2	A8X1C3	A8XSE7	Protein CBR-CEC-5.	Protein CBR-HPL-2.	0.564
cec-5	let-418	A8X1C3	A8X9E2	Protein CBR-CEC-5.	Protein CBR-LET-418.	0.526
cec-6	cec-3	A8XWR1	A8WSC1	Protein CBG19921.	Protein CBR-CEC-3.	0.744
cec-6	cec-5	A8XWR1	A8X1C3	Protein CBG19921.	Protein CBR-CEC-5.	0.708
cec-6	let-418	A8XWR1	A8X9E2	Protein CBG19921.	Protein CBR-LET-418.	0.604
cec-8	let-418	A8XIH0	A8X9E2	Protein CBR-CEC-8.	Protein CBR-LET-418.	0.523