(15 nodes) Pumilio RNA-binding repeat network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	puf-6.2	Protein CBG11800. (437 aa)
	puf-8	Protein CBR-PUF-8. (535 aa)
	puf-6.1	Protein CBG13175. (394 aa)
	puf-1.2	Protein CBG13460. (593 aa)
	puf-12	Protein CBR-PUF-12. (795 aa)
	puf-9	Protein CBR-PUF-9. (698 aa)
	puf-6.4	Protein CBG22348. (395 aa)
	CBG26313	Protein CBG26313. (647 aa)
	puf-3	Protein CBR-PUF-11. (526 aa)
	puf-5	Protein CBR-PUF-5. (453 aa)
	puf-2	Protein CBG02702. (493 aa)
	puf-1.1	Protein CBG02701. (766 aa)
	CBG06093	Protein CBG06093. (608 aa)
	puf-6.3	Protein CBG06390. (340 aa)
	puf-4	Protein CBG09894. (526 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG06093	CBG26313	A8X0X4	B6IG86	Protein CBG06093.	Protein CBG26313.	0.540
CBG06093	puf-12	A8X0X4	A8XHU8	Protein CBG06093.	Protein CBR-PUF-12.	0.767
CBG26313	CBG06093	B6IG86	A8X0X4	Protein CBG26313.	Protein CBG06093.	0.540
CBG26313	puf-12	B6IG86	A8XHU8	Protein CBG26313.	Protein CBR-PUF-12.	0.767
puf-1.2	puf-8	A8XHP9	A8XH48	Protein CBG13460.	Protein CBR-PUF-8.	0.447
puf-12	CBG06093	A8XHU8	A8X0X4	Protein CBR-PUF-12.	Protein CBG06093.	0.767
puf-12	CBG26313	A8XHU8	B6IG86	Protein CBR-PUF-12.	Protein CBG26313.	0.767
puf-12	puf-3	A8XHU8	A8WQV4	Protein CBR-PUF-12.	Protein CBR-PUF-11.	0.529
puf-12	puf-4	A8XHU8	A8X9X1	Protein CBR-PUF-12.	Protein CBG09894.	0.529
puf-12	puf-8	A8XHU8	A8XH48	Protein CBR-PUF-12.	Protein CBR-PUF-8.	0.654
puf-12	puf-9	A8XHU8	A8XKM1	Protein CBR-PUF-12.	Protein CBR-PUF-9.	0.759
puf-3	puf-12	A8WQV4	A8XHU8	Protein CBR-PUF-11.	Protein CBR-PUF-12.	0.529
puf-3	puf-5	A8WQV4	A8WNC5	Protein CBR-PUF-11.	Protein CBR-PUF-5.	0.554
puf-3	puf-8	A8WQV4	A8XH48	Protein CBR-PUF-11.	Protein CBR-PUF-8.	0.424
puf-4	puf-12	A8X9X1	A8XHU8	Protein CBG09894.	Protein CBR-PUF-12.	0.529
puf-4	puf-5	A8X9X1	A8WNC5	Protein CBG09894.	Protein CBR-PUF-5.	0.552
puf-5	puf-3	A8WNC5	A8WQV4	Protein CBR-PUF-5.	Protein CBR-PUF-11.	0.554
puf-5	puf-4	A8WNC5	A8X9X1	Protein CBR-PUF-5.	Protein CBG09894.	0.552
puf-5	puf-6.1	A8WNC5	A8XH83	Protein CBR-PUF-5.	Protein CBG13175.	0.455
puf-5	puf-6.2	A8WNC5	A8XE27	Protein CBR-PUF-5.	Protein CBG11800.	0.479