(26 nodes) Integrase, catalytic core network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG25708	Protein CBG25708. (2435 aa)
	CBG12679	Protein CBG12679. (340 aa)
	CBG05277	Protein CBG05277. (924 aa)
	CBG24597	Protein CBG24597. (370 aa)
	CBG26950	Protein CBG26950. (811 aa)
	CBG28125	Protein CBG28125. (414 aa)
	CBG24082	Protein CBG24082. (278 aa)
	CBG28064	Protein CBG28064. (1424 aa)
	CBG27228	Protein CBG27228. (1131 aa)
	CBG26128	Protein CBG26128. (1984 aa)
	CBG26654	Protein CBG26654. (561 aa)
	CBG22824	Protein CBG22824. (362 aa)
	CBG20137	Protein CBG20137. (1034 aa)
	CBG17479	Protein CBG17479. (301 aa)
	CBG16472	Protein CBG16472. (501 aa)
	CBG15913	Protein CBG15913. (166 aa)
	CBG26613	Protein CBG26613. (336 aa)
	CBG07229	Protein CBG07229. (411 aa)
	CBG24470	Protein CBG24470. (1179 aa)
	CBG26159	Protein CBG26159. (1333 aa)
	CBG26156	Protein CBG26156. (392 aa)
	CBG27554	Protein CBG27554. (348 aa)
	CBG27949	Protein CBG27949. (462 aa)
	CBG26278	Protein CBG26278. (924 aa)
	CBG25357	Protein CBG25357. (2025 aa)
	CBG14168	Protein CBG14168. (2559 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG17479	CBG24470	A8XR37	H8WH74	Protein CBG17479.	Protein CBG24470.	0.503
CBG17479	CBG26159	A8XR37	B6IKW2	Protein CBG17479.	Protein CBG26159.	0.496
CBG17479	CBG27228	A8XR37	B6IFV1	Protein CBG17479.	Protein CBG27228.	0.441
CBG17479	CBG27554	A8XR37	B6IKL8	Protein CBG17479.	Protein CBG27554.	0.490
CBG24470	CBG17479	H8WH74	A8XR37	Protein CBG24470.	Protein CBG17479.	0.503
CBG24470	CBG26128	H8WH74	B6IFH5	Protein CBG24470.	Protein CBG26128.	0.470
CBG24470	CBG26278	H8WH74	B6IJI3	Protein CBG24470.	Protein CBG26278.	0.433
CBG25357	CBG26128	B6IIM1	B6IFH5	Protein CBG25357.	Protein CBG26128.	0.402
CBG25357	CBG26159	B6IIM1	B6IKW2	Protein CBG25357.	Protein CBG26159.	0.410
CBG25357	CBG27228	B6IIM1	B6IFV1	Protein CBG25357.	Protein CBG27228.	0.476
CBG25357	CBG28064	B6IIM1	B6IGQ4	Protein CBG25357.	Protein CBG28064.	0.466
CBG25708	CBG26128	B6IGX1	B6IFH5	Protein CBG25708.	Protein CBG26128.	0.475
CBG26128	CBG24470	B6IFH5	H8WH74	Protein CBG26128.	Protein CBG24470.	0.470
CBG26128	CBG25357	B6IFH5	B6IIM1	Protein CBG26128.	Protein CBG25357.	0.402
CBG26128	CBG25708	B6IFH5	B6IGX1	Protein CBG26128.	Protein CBG25708.	0.475
CBG26128	CBG26159	B6IFH5	B6IKW2	Protein CBG26128.	Protein CBG26159.	0.483
CBG26128	CBG26278	B6IFH5	B6IJI3	Protein CBG26128.	Protein CBG26278.	0.474
CBG26128	CBG27228	B6IFH5	B6IFV1	Protein CBG26128.	Protein CBG27228.	0.486
CBG26128	CBG28064	B6IFH5	B6IGQ4	Protein CBG26128.	Protein CBG28064.	0.476
CBG26159	CBG17479	B6IKW2	A8XR37	Protein CBG26159.	Protein CBG17479.	0.496