(11 nodes) Tryptophan synthase beta chain-like, PALP domain network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cbs-1	Protein CBR-CBS-2. (701 aa)
	CBG25013	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (338 aa)
	CBG06975	Protein CBG06975. (423 aa)
	CBG08368	Protein CBG08368. (253 aa)
	cysl-3	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (337 aa)
	cysl-2	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (337 aa)
	CBG12517	Protein CBG12517. (325 aa)
	CBG00666	Protein CBG00666. (502 aa)
	CBG07184	Protein CBG07184. (194 aa)
	CBG13739	Protein CBG13739. (305 aa)
	cysl-1	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (341 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00666	CBG06975	A8WNC1	A8X405	Protein CBG00666.	Protein CBG06975.	0.415
CBG00666	CBG08368	A8WNC1	A8X6E4	Protein CBG00666.	Protein CBG08368.	0.415
CBG00666	CBG12517	A8WNC1	A8XFY4	Protein CBG00666.	Protein CBG12517.	0.921
CBG00666	CBG13739	A8WNC1	A8XIK8	Protein CBG00666.	Protein CBG13739.	0.921
CBG00666	CBG25013	A8WNC1	A8WLY8	Protein CBG00666.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.415
CBG00666	cbs-1	A8WNC1	A8WRM3	Protein CBG00666.	Protein CBR-CBS-2.	0.939
CBG00666	cysl-1	A8WNC1	A8WRN7	Protein CBG00666.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.415
CBG00666	cysl-2	A8WNC1	A8WP61	Protein CBG00666.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.415
CBG00666	cysl-3	A8WNC1	A8XB74	Protein CBG00666.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.415
CBG06975	CBG00666	A8X405	A8WNC1	Protein CBG06975.	Protein CBG00666.	0.415
CBG06975	CBG07184	A8X405	A8X3I8	Protein CBG06975.	Protein CBG07184.	0.415
CBG06975	CBG12517	A8X405	A8XFY4	Protein CBG06975.	Protein CBG12517.	0.415
CBG06975	CBG13739	A8X405	A8XIK8	Protein CBG06975.	Protein CBG13739.	0.415
CBG06975	CBG25013	A8X405	A8WLY8	Protein CBG06975.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.427
CBG06975	cbs-1	A8X405	A8WRM3	Protein CBG06975.	Protein CBR-CBS-2.	0.441
CBG07184	CBG06975	A8X3I8	A8X405	Protein CBG07184.	Protein CBG06975.	0.415
CBG07184	CBG08368	A8X3I8	A8X6E4	Protein CBG07184.	Protein CBG08368.	0.415
CBG07184	CBG12517	A8X3I8	A8XFY4	Protein CBG07184.	Protein CBG12517.	0.447
CBG07184	CBG13739	A8X3I8	A8XIK8	Protein CBG07184.	Protein CBG13739.	0.451
CBG07184	CBG25013	A8X3I8	A8WLY8	Protein CBG07184.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.415