(13 nodes) DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbr-rha-1	Protein CBR-RHA-1. (1402 aa)
	let-355	Protein CBG12480. (859 aa)
	ddx-35	Protein CBG15221. (722 aa)
	rha-2	Protein CBR-RHA-2. (1170 aa)
	xpd-1	Protein CBG15713. (755 aa)
	dog-1	Protein CBR-DOG-1. (885 aa)
	mog-4	Protein CBR-MOG-4. (1007 aa)
	him-6	Protein CBR-HIM-6. (1005 aa)
	CBG21674	Protein CBG21674. (171 aa)
	chd-1	Protein CBR-CHD-1. (1465 aa)
	let-418	Protein CBR-LET-418. (1863 aa)
	mog-5	Protein CBR-MOG-5. (1220 aa)
	mog-1	Protein CBR-MOG-1. (990 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG21674	dog-1	A8Y0S0	A8XWG9	Protein CBG21674.	Protein CBR-DOG-1.	0.562
CBG21674	xpd-1	A8Y0S0	A8XML3	Protein CBG21674.	Protein CBG15713.	0.514
chd-1	let-418	A8XBT1	A8X9E2	Protein CBR-CHD-1.	Protein CBR-LET-418.	0.431
ddx-35	mog-1	A8XLM7	A8X9Z8	Protein CBG15221.	Protein CBR-MOG-1.	0.949
ddx-35	mog-4	A8XLM7	A8XYT5	Protein CBG15221.	Protein CBR-MOG-4.	0.418
ddx-35	rha-2	A8XLM7	A8XLY8	Protein CBG15221.	Protein CBR-RHA-2.	0.861
dog-1	CBG21674	A8XWG9	A8Y0S0	Protein CBR-DOG-1.	Protein CBG21674.	0.562
dog-1	him-6	A8XWG9	A8Y0R9	Protein CBR-DOG-1.	Protein CBR-HIM-6.	0.876
him-6	dog-1	A8Y0R9	A8XWG9	Protein CBR-HIM-6.	Protein CBR-DOG-1.	0.876
him-6	xpd-1	A8Y0R9	A8XML3	Protein CBR-HIM-6.	Protein CBG15713.	0.514
let-355	mog-1	A8XFV1	A8X9Z8	Protein CBG12480.	Protein CBR-MOG-1.	0.770
let-355	mog-4	A8XFV1	A8XYT5	Protein CBG12480.	Protein CBR-MOG-4.	0.451
let-355	rha-2	A8XFV1	A8XLY8	Protein CBG12480.	Protein CBR-RHA-2.	0.867
let-418	chd-1	A8X9E2	A8XBT1	Protein CBR-LET-418.	Protein CBR-CHD-1.	0.431
mog-1	ddx-35	A8X9Z8	A8XLM7	Protein CBR-MOG-1.	Protein CBG15221.	0.949
mog-1	let-355	A8X9Z8	A8XFV1	Protein CBR-MOG-1.	Protein CBG12480.	0.770
mog-1	mog-4	A8X9Z8	A8XYT5	Protein CBR-MOG-1.	Protein CBR-MOG-4.	0.967
mog-1	mog-5	A8X9Z8	A8WUF8	Protein CBR-MOG-1.	Protein CBR-MOG-5.	0.784
mog-4	ddx-35	A8XYT5	A8XLM7	Protein CBR-MOG-4.	Protein CBG15221.	0.418
mog-4	let-355	A8XYT5	A8XFV1	Protein CBR-MOG-4.	Protein CBG12480.	0.451