(24 nodes) Fungal lipase-like domain network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG23826	Protein CBG23826. (377 aa)
	CBG01090	Protein CBG01090. (278 aa)
	CBG01095	Protein CBG01095. (304 aa)
	CBG02522	Protein CBG02522. (343 aa)
	CBG06065	Protein CBG06065. (338 aa)
	CBG07778	Protein CBG07778. (334 aa)
	CBG07383	Protein CBG07383. (302 aa)
	CBG09691	Protein CBG09691. (294 aa)
	CBG10127	Protein CBG10127. (353 aa)
	CBG10128	Protein CBG10128. (362 aa)
	CBG10131	Protein CBG10131. (344 aa)
	CBG10132	Protein CBG10132. (333 aa)
	CBG10829	Protein CBG10829. (305 aa)
	CBG11750	Protein CBG11750. (329 aa)
	CBG11730	Protein CBG11730. (284 aa)
	CBG11685	Protein CBG11685. (238 aa)
	CBG12141	Protein CBG12141. (336 aa)
	CBG13893	Protein CBG13893. (339 aa)
	CBG13892	Protein CBG13892. (339 aa)
	dagl-2	Protein CBG15206. (651 aa)
	CBG18898	Protein CBG18898. (372 aa)
	CBG21853	Protein CBG21853. (284 aa)
	CBG25822	Protein CBG25822. (188 aa)
	CBG10122	Protein CBG10122. (209 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02522	CBG10829	A8WU44	A8XBW4	Protein CBG02522.	Protein CBG10829.	0.448
CBG02522	CBG12141	A8WU44	A8XEU8	Protein CBG02522.	Protein CBG12141.	0.460
CBG02522	CBG23826	A8WU44	A8WJD9	Protein CBG02522.	Protein CBG23826.	0.474
CBG06065	CBG09691	A8X0Z5	A8X8H5	Protein CBG06065.	Protein CBG09691.	0.438
CBG09691	CBG06065	A8X8H5	A8X0Z5	Protein CBG09691.	Protein CBG06065.	0.438
CBG10122	dagl-2	G2J6N6	A8XLP0	Protein CBG10122.	Protein CBG15206.	0.625
CBG10128	dagl-2	A8XAG3	A8XLP0	Protein CBG10128.	Protein CBG15206.	0.625
CBG10131	dagl-2	A8XAG5	A8XLP0	Protein CBG10131.	Protein CBG15206.	0.564
CBG10132	dagl-2	A8XAG6	A8XLP0	Protein CBG10132.	Protein CBG15206.	0.564
CBG10829	CBG02522	A8XBW4	A8WU44	Protein CBG10829.	Protein CBG02522.	0.448
CBG12141	CBG02522	A8XEU8	A8WU44	Protein CBG12141.	Protein CBG02522.	0.460
CBG23826	CBG02522	A8WJD9	A8WU44	Protein CBG23826.	Protein CBG02522.	0.474
dagl-2	CBG10122	A8XLP0	G2J6N6	Protein CBG15206.	Protein CBG10122.	0.625
dagl-2	CBG10128	A8XLP0	A8XAG3	Protein CBG15206.	Protein CBG10128.	0.625
dagl-2	CBG10131	A8XLP0	A8XAG5	Protein CBG15206.	Protein CBG10131.	0.564
dagl-2	CBG10132	A8XLP0	A8XAG6	Protein CBG15206.	Protein CBG10132.	0.564