STRINGSTRING
smn-1 smn-1 rsd-6 rsd-6 nhr-61 nhr-61 tsn-1 tsn-1 CBG05915 CBG05915 CBG07263 CBG07263 akap-1 akap-1 Cbr-tag-250 Cbr-tag-250 CBG17880 CBG17880 CBG20325 CBG20325 ekl-1 ekl-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
smn-1Protein CBR-SMN-1. (194 aa)
rsd-6Protein CBR-RSD-6. (813 aa)
nhr-61Protein CBR-NHR-61. (437 aa)
tsn-1Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (913 aa)
CBG05915Protein CBG05915. (546 aa)
CBG07263Protein CBG07263. (702 aa)
akap-1Protein CBG09108. (989 aa)
Cbr-tag-250Protein CBR-TAG-250. (620 aa)
CBG17880Protein CBG17880. (678 aa)
CBG20325Protein CBG20325. (303 aa)
ekl-1Protein CBR-EKL-1. (644 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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