(100 nodes) ShKT domain network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nas-31	Zinc metalloproteinase. (610 aa)
	CBG10495	Protein CBG10495. (248 aa)
	CBG10496	Protein CBG10496. (248 aa)
	CBG10508	Protein CBG10508. (245 aa)
	CBG10350	Protein CBG10350. (256 aa)
	CBG10351	Protein CBG10351. (209 aa)
	CBG10416	Protein CBG10416. (252 aa)
	CBG10417	Protein CBG10417. (251 aa)
	CBG10418	Protein CBG10418. (175 aa)
	CBG10419	Protein CBG10419. (155 aa)
	CBG10421	Protein CBG10421. (169 aa)
	CBG10422	Protein CBG10422. (166 aa)
	CBG10423	Protein CBG10423. (152 aa)
	CBG10424	Protein CBG10424. (258 aa)
	CBG10427	Protein CBG10427. (246 aa)
	CBG10428	Protein CBG10428. (220 aa)
	CBG10429	Protein CBG10429. (120 aa)
	CBG10430	Protein CBG10430. (170 aa)
	CBG10467	Protein CBG10467. (164 aa)
	phat-2	Protein CBR-PHAT-2. (250 aa)
	nas-11	Metalloendopeptidase. (581 aa)
	CBG11138	Protein CBG11138. (226 aa)
	CBG11139	Protein CBG11139. (284 aa)
	CBG11142	Protein CBG11142. (104 aa)
	CBG11199	Protein CBG11199. (238 aa)
	tyr-1.2	Protein CBR-TYR-1. (618 aa)
	tyr-1.1	Protein CBG12272. (594 aa)
	CBG13046	Protein CBG13046. (125 aa)
	skpo-3	Protein CBG13113. (1083 aa)
	nas-7	Metalloendopeptidase. (389 aa)
	CBG14938	Protein CBG14938. (523 aa)
	CBG15963	Protein CBG15963. (384 aa)
	nas-10	Protein CBR-NAS-10. (599 aa)
	skpo-2	Protein CBG17768. (735 aa)
	nas-32	Zinc metalloproteinase. (667 aa)
	CBG17919	Protein CBG17919. (163 aa)
	CBG17922	Protein CBG17922. (245 aa)
	tyr-2	Protein CBR-TYR-2. (679 aa)
	CBG18354	Protein CBG18354. (645 aa)
	CBG17971	Protein CBG17971. (244 aa)
	CBG18408	Protein CBG18408. (868 aa)
	CBG18554	Protein CBG18554. (67 aa)
	CBG20815	Protein CBG20815. (104 aa)
	CBG20816	Protein CBG20816. (169 aa)
	CBG20818	Protein CBG20818. (136 aa)
	CBG20825	Protein CBG20825. (561 aa)
	CBG20992	Protein CBG20992. (100 aa)
	CBG20993	Protein CBG20993. (148 aa)
	CBG21037	Protein CBG21037. (273 aa)
	CBG21039	Protein CBG21039. (130 aa)
	CBG21349	Protein CBG21349. (755 aa)
	tyr-3	Protein CBR-TYR-3. (693 aa)
	CBG22842	Protein CBG22842. (240 aa)
	CBG22843	Protein CBG22843. (240 aa)
	CBG22844	Protein CBG22844. (127 aa)
	CBG22849	Protein CBG22849. (154 aa)
	CBG22851	Protein CBG22851. (180 aa)
	CBG22911	Protein CBG22911. (206 aa)
	CBG23515	Protein CBG23515. (228 aa)
	CBG23485	Protein CBG23485. (145 aa)
	CBG28007	Protein CBG28007. (207 aa)
	CBG27015	Protein CBG27015. (145 aa)
	dod-6.1	Protein CBG25878. (60 aa)
	CBG25670	Protein CBG25670. (165 aa)
	CBG27304	Protein CBG27304. (157 aa)
	CBG07468	Protein CBG07468. (129 aa)
	CBG20995	Protein CBG20995. (196 aa)
	CBG23670	Protein CBG23670. (140 aa)
	CBG23914	Protein CBG23914. (146 aa)
	mul-1.2	Protein CBG23915. (188 aa)
	CBG23916	Protein CBG23916. (211 aa)
	mul-1.1	Protein CBG23917. (219 aa)
	CBG24705	Protein CBG24705. (101 aa)
	CBG24920	Protein CBG24920. (168 aa)
	nas-6	Metalloendopeptidase. (341 aa)
	skpo-1	Protein CBG00649. (658 aa)
	CBG00624	Protein CBG00624. (170 aa)
	Cbr-tag-293	Protein CBR-TAG-293. (250 aa)
	nas-14	Metalloendopeptidase. (502 aa)
	CBG01687	Protein CBG01687. (434 aa)
	lgc-22	Protein CBR-LGC-22. (450 aa)
	CBG01620	Protein CBG01620. (214 aa)
	CBG03259	Protein CBG03259. (97 aa)
	CBG03105	Protein CBG03105. (148 aa)
	nas-12	Metalloendopeptidase. (399 aa)
	mlt-7	Protein CBR-MLT-7. (1309 aa)
	tyr-4	Protein CBR-TYR-4. (775 aa)
	CBG03731	Protein CBG03731. (250 aa)
	CBG04613	Protein CBG04613. (139 aa)
	CBG04629	Protein CBG04629. (213 aa)
	CBG05160	Protein CBG05160. (435 aa)
	nas-8	Metalloendopeptidase. (400 aa)
	CBG06864	Protein CBG06864. (237 aa)
	nas-13	Metalloendopeptidase. (411 aa)
	CBG07566	Protein CBG07566. (471 aa)
	Cbr-mab-7	Protein CBR-MAB-7. (489 aa)
	nas-15	Metalloendopeptidase. (558 aa)
	suro-1	Protein CBR-SURO-1. (689 aa)
	CBG08286	Protein CBG08286. (153 aa)
	CBG09055	Protein CBG09055. (140 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG03259	CBG20825	A8WSF9	A8XYQ2	Protein CBG03259.	Protein CBG20825.	0.650
CBG10467	nas-14	A8XBA3	A8WQR4	Protein CBG10467.	Metalloendopeptidase.	0.643
CBG10467	tyr-1.1	A8XBA3	A8XF53	Protein CBG10467.	Protein CBG12272.	0.452
CBG10467	tyr-1.2	A8XBA3	A8XF52	Protein CBG10467.	Protein CBR-TYR-1.	0.452
CBG11138	CBG20993	A8XCJ3	A8XZ46	Protein CBG11138.	Protein CBG20993.	0.418
CBG11139	nas-32	A8XCJ4	A8XS17	Protein CBG11139.	Zinc metalloproteinase.	0.632
CBG20816	CBG20825	A8XYP4	A8XYQ2	Protein CBG20816.	Protein CBG20825.	0.418
CBG20818	CBG23914	A8XYP5	A8WJK5	Protein CBG20818.	Protein CBG23914.	0.626
CBG20825	CBG03259	A8XYQ2	A8WSF9	Protein CBG20825.	Protein CBG03259.	0.650
CBG20825	CBG20816	A8XYQ2	A8XYP4	Protein CBG20825.	Protein CBG20816.	0.418
CBG20825	CBG23914	A8XYQ2	A8WJK5	Protein CBG20825.	Protein CBG23914.	0.638
CBG20993	CBG11138	A8XZ46	A8XCJ3	Protein CBG20993.	Protein CBG11138.	0.418
CBG20993	CBG23485	A8XZ46	A8Y3T3	Protein CBG20993.	Protein CBG23485.	0.445
CBG23485	CBG20993	A8Y3T3	A8XZ46	Protein CBG23485.	Protein CBG20993.	0.445
CBG23914	CBG20818	A8WJK5	A8XYP5	Protein CBG23914.	Protein CBG20818.	0.626
CBG23914	CBG20825	A8WJK5	A8XYQ2	Protein CBG23914.	Protein CBG20825.	0.638
nas-14	CBG10467	A8WQR4	A8XBA3	Metalloendopeptidase.	Protein CBG10467.	0.643
nas-14	tyr-1.1	A8WQR4	A8XF53	Metalloendopeptidase.	Protein CBG12272.	0.589
nas-14	tyr-1.2	A8WQR4	A8XF52	Metalloendopeptidase.	Protein CBR-TYR-1.	0.589
nas-32	CBG11139	A8XS17	A8XCJ4	Zinc metalloproteinase.	Protein CBG11139.	0.632