STRINGSTRING
CBG12888 CBG12888 gta-1 gta-1 eppl-1 eppl-1 oatr-1 oatr-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CBG12888Protein CBG12888; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (444 aa)
gta-1Protein CBR-GTA-1; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (483 aa)
eppl-1Protein CBG18478; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (467 aa)
oatr-1Protein CBG09115; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (422 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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